Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J04
         (204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    24   2.4  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    24   2.4  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    23   5.5  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    23   5.5  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    23   5.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    23   7.3  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    23   7.3  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    23   7.3  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    22   9.7  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    22   9.7  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    22   9.7  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         22   9.7  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    22   9.7  

>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 98  MNMLTLIICSACEVSLGVSLYYIIIASICNFW 193
           +N+   +ICS C +S   +L++I++      W
Sbjct: 232 LNLNKALICSTCSIS--AALFFILLLVCIPIW 261


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 98  MNMLTLIICSACEVSLGVSLYYIIIASICNFW 193
           +N+   +ICS C +S   +L++I++      W
Sbjct: 222 LNLNKALICSTCSIS--AALFFILLLVCIPIW 251


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 70  EQRVHLFRIDEHV 108
           E R+H+F IDE V
Sbjct: 248 ESRIHMFEIDEDV 260


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  MNMLTLIICSACEVSLGVSLYYIII 172
           +N+   +ICS C +S  + L+ + +
Sbjct: 198 LNLDKALICSTCSISAALLLFLLYV 222


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  MNMLTLIICSACEVSLGVSLYYIII 172
           +N+   +ICS C +S  + L+ + +
Sbjct: 176 LNLDKALICSTCSISAALLLFLLYV 200


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 101 SSILNKCTLCSV 66
           SS+LN+CTL S+
Sbjct: 421 SSLLNRCTLSSI 432


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 78   SLFSTNIRVCQGRSGPPLHRPYREYV 1
            SL     RV +G  GP L R   EYV
Sbjct: 1083 SLAIAMTRVYEGDDGPTLKRLINEYV 1108


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 65  VLNKEYTYLELMNMLTL 115
           V+N  YT+L L N LT+
Sbjct: 64  VINTTYTFLYLRNSLTI 80


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 85  SVLFVQYQYTSVS--GTLWSPAPPS 17
           S +F    ++SV+   TLWSP P S
Sbjct: 28  SFIFALLFHSSVADVNTLWSPGPES 52


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 155 GSHRAKPRTRYK*LMLTCSSILNKCTLCSVP 63
           G H     T    L +TC++I+ KC    +P
Sbjct: 401 GYHFMASSTELPWLRVTCNAIVTKCLDSQLP 431


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 161 YIIIASICNFWN 196
           Y+ I  +C FWN
Sbjct: 272 YVEILDVCTFWN 283


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 62  LVLNKEYTYLELMNMLTLIICSACEVSLGVSLY 160
           L+ +KE+ Y  +++   L I  ACE  L   L+
Sbjct: 11  LIKSKEHCYTMVISFAVLSIHYACECFLYPKLF 43


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 69  STNIRVCQGRSGPPLHRPYREYV 1
           + N+R+ +   GP LH    EY+
Sbjct: 93  NANLRIIRAPRGPSLHFRIHEYM 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,811
Number of Sequences: 5004
Number of extensions: 13550
Number of successful extensions: 42
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)