Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J04
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991     26   3.6  
03_06_0484 + 34233042-34233258,34235317-34237049                       25   6.4  
03_02_0540 + 9340379-9340592,9341250-9342988                           25   6.4  
03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371...    25   6.4  
01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167     25   6.4  
01_06_1152 + 34939884-34941824                                         25   6.4  
10_07_0145 - 13381172-13381334,13381468-13381665,13381753-133819...    25   8.4  
07_01_0677 + 5087584-5087589,5088890-5089172,5093561-5093704,509...    25   8.4  

>06_03_0858 +
          25448807-25448815,25451253-25452038,25452956-25452991
          Length = 276

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 81 YSLFSTNIRVCQGRSGPPLHRPY 13
          Y+L+   IR  +G + PPL  PY
Sbjct: 21 YTLYFDKIRENKGATAPPLRHPY 43


>03_06_0484 + 34233042-34233258,34235317-34237049
          Length = 649

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 74  CSVPIYECVRDALVPRSTV 18
           C  P+ +C+RDA + +STV
Sbjct: 320 CMEPVEKCLRDAKMDKSTV 338


>03_02_0540 + 9340379-9340592,9341250-9342988
          Length = 650

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 74  CSVPIYECVRDALVPRSTV 18
           C  P+ +C+RDA + +STV
Sbjct: 319 CMEPVEKCLRDAKMDKSTV 337


>03_01_0490 +
           3711009-3711383,3712104-3712202,3713209-3713461,
           3713908-3714090,3714091-3714227,3714511-3714710,
           3714797-3714994,3715109-3715271
          Length = 535

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 92  ELMNMLTLIICSACEVSLGVSLYYIII 172
           ELM    L++C++ ++ LG   YY+ I
Sbjct: 487 ELMVAFYLLVCASYDLVLGAKHYYLYI 513


>01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167
          Length = 314

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 95  LMNMLTLIICSACEVSLGVSLYYIIIASIC 184
           LM+ L L+IC    +   V++ Y+I+  +C
Sbjct: 184 LMHHLILLICFTLALYRNVTINYLILTLVC 213


>01_06_1152 + 34939884-34941824
          Length = 646

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 28  RGTRASLTHSYIGTEQRVHLFRIDEH 105
           RG R     SY+  + +VHLF  D+H
Sbjct: 505 RGLRKEPGCSYVEHKGKVHLFMADDH 530


>10_07_0145 -
           13381172-13381334,13381468-13381665,13381753-13381952,
           13382036-13382149,13382255-13382391,13382501-13382611,
           13383793-13384060,13385034-13385132,13385277-13385471
          Length = 494

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 92  ELMNMLTLIICSACEVSLGVSLYYIII 172
           EL+  L L+IC++ +  LG   YYI I
Sbjct: 446 ELLLALYLLICASYDFVLGNHKYYIYI 472


>07_01_0677 +
           5087584-5087589,5088890-5089172,5093561-5093704,
           5094167-5095269
          Length = 511

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 86  YLELMNMLTLIICSACEVSLGVSLY 160
           +L  ++MLT+I C A  VSL  S+Y
Sbjct: 447 HLRWVHMLTVIACLAMIVSLMTSVY 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,704,726
Number of Sequences: 37544
Number of extensions: 88818
Number of successful extensions: 232
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)