Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J04
         (204 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    27   2.4  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    27   2.4  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    27   2.4  
Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical p...    25   5.6  
M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 73  VQYQYTSVSGTLWSPAPPSL 14
           VQ+Q+  ++ T++SP PP L
Sbjct: 725 VQFQFALLTDTMYSPLPPDL 744


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 73  VQYQYTSVSGTLWSPAPPSL 14
           VQ+Q+  ++ T++SP PP L
Sbjct: 725 VQFQFALLTDTMYSPLPPDL 744


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 73  VQYQYTSVSGTLWSPAPPSL 14
           VQ+Q+  ++ T++SP PP L
Sbjct: 725 VQFQFALLTDTMYSPLPPDL 744


>Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical
           protein K05C4.11 protein.
          Length = 436

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  EYTYLELMNMLTLIICSACEV 139
           EY    ++N++TLI CS C +
Sbjct: 3   EYLLFIIINVITLITCSYCPI 23


>M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical
           protein B0303.4 protein.
          Length = 616

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +2

Query: 62  LVLNKEYTYLELMNMLTLIICSAC-----EVSLGVSLYYIIIASICNFWNT 199
           L++     YLEL  ++ ++I  AC     ++S    LYY +     + W T
Sbjct: 4   LIVKSALEYLELSTVVAILIIIACALLSYQISARRPLYYNLFVVEMHTWTT 54


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical
           protein F22E10.2 protein.
          Length = 1324

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 46  LTHSYIGTEQRVHLFRID-EHVNINYL*RVRGFARCEPILYNYSLY 180
           LT  Y   +  V +  +D   +N+ +L  V G  + EPIL+N +++
Sbjct: 465 LTRLYEPEQGSVQIDGVDVRDLNLEWLRNVVGIVQQEPILFNDTIH 510


>Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical
           protein C04B4.1 protein.
          Length = 486

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 4   IFAVRTVERGTRASLTHSYIGTEQRVHLFRID-EH 105
           ++A  ++++    S T   +  E+R HLFR+D EH
Sbjct: 197 LYAENSLKKYIGDSTTKLRVFIERRTHLFRVDGEH 231


>U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical
           protein F43C9.1 protein.
          Length = 320

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 1   DIFAVRTVERGTRASLTHSYIGTEQRVHLFRIDEHVNINY 120
           + +  R +E   R  LTH+Y+  + R H    + HV I++
Sbjct: 251 ETWKTRFLEECERRHLTHNYMEFQSRTH---TNSHVKISF 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,863,479
Number of Sequences: 27780
Number of extensions: 80121
Number of successful extensions: 226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)