Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J04
         (204 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   1.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   1.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   3.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    19   5.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   7.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   7.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 125 SACEVSLGVSLYYIIIASICNFW 193
           + C +S   ++YYIII +   F+
Sbjct: 103 ATCVLSCWTNIYYIIILAWALFY 125


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 125 SACEVSLGVSLYYIIIASICNFW 193
           + C +S   ++YYIII +   F+
Sbjct: 156 ATCVLSCWTNIYYIIILAWALFY 178


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 89  NKCTLCSVPIYEC 51
           NKC  CS   +EC
Sbjct: 88  NKCIGCSAEKFEC 100


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 68  LNKEYTYLELMNMLTLIICS 127
           +NK +  LEL N+ T  I S
Sbjct: 92  INKPFKRLELFNITTTTIHS 111


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 81  YSLFSTNIRVCQGRSGP 31
           + LF+T  R+C G + P
Sbjct: 320 FPLFTTVHRICIGETMP 336


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 5/17 (29%), Positives = 9/17 (52%)
 Frame = +2

Query: 143 LGVSLYYIIIASICNFW 193
           +G++ YY  +     FW
Sbjct: 227 IGLNTYYFFLRQAFPFW 243


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 5/17 (29%), Positives = 9/17 (52%)
 Frame = +2

Query: 143 LGVSLYYIIIASICNFW 193
           +G++ YY  +     FW
Sbjct: 227 IGLNTYYFFLRQAFPFW 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,709
Number of Sequences: 438
Number of extensions: 1278
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)