Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J03
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 90 9e-20
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 66 1e-12
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 0.95
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 27 0.95
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 26 1.3
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 2.9
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 2.9
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 24 5.1
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 24 5.1
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 23 8.8
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 89.8 bits (213), Expect = 9e-20
Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 2/103 (1%)
Frame = +1
Query: 10 LSVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 183
L++ + P VLF I+D R++ ++ RVIGTLLGT D +E+ +CF VPH E ++QVE
Sbjct: 21 LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80
Query: 184 AELNYAMDVYELNRRVNASENIVGWWATGNEVRNHASVIHEYY 312
E+ Y +Y L+ + N E +VGW+AT ++ +++I Y
Sbjct: 81 VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLY 123
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 66.5 bits (155), Expect = 1e-12
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Frame = +1
Query: 16 VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 186
V VHP+VL VD+Y R RV+G LLG ++ VV V N + +P +E
Sbjct: 17 VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76
Query: 187 -ELNYAMDVYELNRRVNASENIVGWWATGNEVR 282
+ N+ + E+ +++NA+E +VGW+ TG ++R
Sbjct: 77 LDHNFMESMNEMFKKINANEKLVGWYHTGPQLR 109
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 0.95
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 58 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 183
Y+ R DSHR I L GT + + + + +K H ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 0.95
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -3
Query: 309 VLVNYRGMISHLISCGPPANNVLRCINSSV*FINIHGIIKFGLDLVSVLFVRHAEAVCHF 130
V VN G IS P +V S ++ +K G+D++ F+R AE V H
Sbjct: 172 VRVNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNGVDMIFASFIRRAEDVIHI 231
Query: 129 HDSL 118
+ L
Sbjct: 232 REVL 235
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 1.3
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +1
Query: 13 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE- 189
SVK+ V L +++ + V+G + G + + + + F +P + +V A
Sbjct: 34 SVKISAVALLKMLRHVSQ--GMPLEVMGYVQGKVEGASLIILDSFALPVEGTETRVNAHE 91
Query: 190 --LNYAMDVYELNRRVNASENIVGWW 261
Y++ + L + V EN++GW+
Sbjct: 92 EAQEYSVQYHTLCKSVYRHENVIGWY 117
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 2.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 155 GTQKQFVTSTTPLSLVPNNV 96
GTQ+ FV TT + PNNV
Sbjct: 187 GTQQNFVRQTTKYWVHPNNV 206
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 2.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 315 SIVLVNYRGMISHLISCGPPANNVLRC---INSSV*FINI 205
SI ++ R + + SCGP NN+ R + + F+N+
Sbjct: 679 SIPAISKRSLTKPVTSCGPLLNNIRRLTVNLEMKISFVNL 718
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 175 QVEAELNYAMDVYELNRRVNASENIVG 255
++ AEL Y D+ L R N S+N G
Sbjct: 350 ELSAELAYKEDLTSLASRANISDNSTG 376
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 5.1
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 157 HKEHADQVEAELNYAMDVYELNRRVNASENIVGWWATGNEVRNHASV 297
H+E Q + LN+ N N+ +N+ ++ N + H SV
Sbjct: 113 HEEIHHQQQLHLNHQYQHQHKNVAANSIDNLSRQYSQPNHINTHDSV 159
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 23.4 bits (48), Expect = 8.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 109 FPIMFR*LYESPHFDVHMHLLFEIKQQGEP 20
F I F LY S D M LF+ + +G P
Sbjct: 298 FWIQFAVLYRSGPGDAQMPSLFQARLEGSP 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,640
Number of Sequences: 5004
Number of extensions: 23048
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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