Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J03
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 94 2e-20
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 60 4e-10
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 51 2e-07
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 36 0.006
03_05_0751 - 27389910-27392105 32 0.093
07_01_0579 + 4299104-4299652,4300845-4300935,4301018-4301211,430... 27 4.6
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 26 8.0
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 26 8.0
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 94.3 bits (224), Expect = 2e-20
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = +1
Query: 13 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 189
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 190 LNYAMDVYELNRRVNASENIVGWWATGNEVRNHASVIHEYYTRE 321
+ Y ++Y + +VN E IVGW++TG V +++IH++Y+RE
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVGWFSTGFGVSGGSTLIHDFYSRE 121
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 60.1 bits (139), Expect = 4e-10
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +1
Query: 16 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 183
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 184 AELNYAMDVYELNRRVNA 237
+ NY ++ + +R+NA
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 88 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNASENIVGWW 261
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN N VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 36.3 bits (80), Expect = 0.006
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Frame = +1
Query: 7 GLSVKVHPVVLFQIVDAYERRNADSH----------------RVIGTLLGTSDKGVVEVT 138
GL+ K+HP+V+ + D + R A + RV G ++G VE+
Sbjct: 26 GLTFKLHPLVIVNVSDHHTRVKAQAACSGDGASSAAAGGQPPRVFGCVIGVQRGRTVEIF 85
Query: 139 NCFCVPHKEHADQVEAELNYAM--DVYELNRRVNASENIVGWWATGNEVRNHASVIHE 306
N F + D V L+ A EL ++V ++GW++TG++VR+ IH+
Sbjct: 86 NSFELV----LDPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHK 139
>03_05_0751 - 27389910-27392105
Length = 731
Score = 32.3 bits (70), Expect = 0.093
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 306 LVNYRGMISHLISCGPPANNVLRCINSSV*FINIHGIIKFGLDLVSVLFVRHAEAVCHF 130
L +R +I ++ P N VL I I IHGI+ G V R EA+ HF
Sbjct: 560 LYRFRNLIDETVAIDSPRNRVLNTIRQVNPAIFIHGIVN-GSYSVPFFITRFREALFHF 617
>07_01_0579 +
4299104-4299652,4300845-4300935,4301018-4301211,
4301501-4301622,4302378-4302856,4303033-4303334
Length = 578
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 228 SSV*FINIHGIIKFGLDLVSVLFVRHAEAVCHFHDSLIASSQ 103
SS +++I I G+D ++V FV+ AE + H + A S+
Sbjct: 276 SSKDWLDIDFGISEGVDFIAVSFVKSAEVINHLKSYIAARSR 317
>08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 25.8 bits (54), Expect = 8.0
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 28 PVVLFQIVDAYERRNADSHRVIGTLLGTSD--KGVVEVTNC--FCVPHKEHADQVEAELN 195
P V+ + ++A+ER++ D V+G +L + K NC C+ E ++ EA
Sbjct: 963 PKVVVENLNAHERKDDDLRFVLGQMLQRNPCVKKFSVSINCENACL---EEVEKAEAAAR 1019
Query: 196 YAMDVYELNR 225
YA+D + NR
Sbjct: 1020 YAVD-FHANR 1028
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 288 MISHLISCGPPANNVLRCINS 226
++ L SCG P NN L C +S
Sbjct: 328 LLKKLSSCGKPPNNTLACGDS 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,498,151
Number of Sequences: 37544
Number of extensions: 152383
Number of successful extensions: 319
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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