Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J03
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    79   6e-16
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    62   1e-10
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...    31   0.15 
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    29   0.60 
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of...    26   5.6  
AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical ...    26   5.6  
AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical ...    26   7.4  
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
 Frame = +1

Query: 1   ARGLSVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPHK 162
           A  L+V VHP V   +VD + RR      N    + +GTL+G  +KG ++VTNCF +P  
Sbjct: 2   ASNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFN 61

Query: 163 EHADQVEAELNYAMDVYELNRRVNASENIVGWWATGNEVRNHASVIHEYYTR 318
           E  D +E +  +   +    ++ + +E  VGW+ T +++ +   + H+YY R
Sbjct: 62  ESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVR 113


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
 Frame = +1

Query: 16  VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 186
           V VHP+VL  +VD + R  +     RV+G LLG+  K   +++ N F VP  E       
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 187 ---ELNYAMDVYELNRRVNASENIVGWWATGNEVRNHASVIHEYYTREC 324
              +++Y   +Y +  +V A E IVGW+ TG ++  +   I+E   R C
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFC 149


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 88  VIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA-ELNYAMDVYELNRRVNASENIVGWW 261
           V+G +LG   D   + VT+ F +P    +  VE+ +  Y     +L + V  +EN+VGW+
Sbjct: 51  VMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQTKHMDLLKLVGRTENVVGWY 110


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
 Frame = +1

Query: 16  VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCFC--VPHKEHADQ 177
           V +HP+V+ Q+ + Y R          +V G +LG  +   VE  N F   +  +E A+ 
Sbjct: 14  VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEP 73

Query: 178 VEAELNYAMDVYELNRRVNASENIVGWWATGNE 276
           V     + +   +    V     ++G +  G +
Sbjct: 74  VTFSTEHLLQRADQYLEVFPELQVIGLYCAGED 106


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 109 FPIMFR*LYESPHFDVHMHLLFE 41
           F + F  LY+ P F +H HLL E
Sbjct: 367 FVLYFITLYQKPFFPIHRHLLLE 389


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 115 DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYE 216
           D G  EV   +   H EH    +  + Y++DV E
Sbjct: 103 DNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCE 136


>AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of
           presenilin 5 protein.
          Length = 770

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 261 PPANNVLRCINSSV*FINIHGIIKFG 184
           PP N+ L  I + V +++ HG+I FG
Sbjct: 93  PPFNSDLDLIQNIVHYLSRHGLINFG 118


>AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical
           protein Y40B1B.6 protein.
          Length = 770

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 261 PPANNVLRCINSSV*FINIHGIIKFG 184
           PP N+ L  I + V +++ HG+I FG
Sbjct: 93  PPFNSDLDLIQNIVHYLSRHGLINFG 118


>AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.4 protein.
          Length = 627

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 322 TPEYSTRELPRHDFSPHFLWPTSQQCSQMH 233
           TP+ +TR +P +D       PT   CS+ H
Sbjct: 101 TPDLNTRLMPFYDSREKERTPTPLDCSEAH 130


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 116 IRESWK*QTASACRTKSTLTKSRPN 190
           +RE W+ + A+ C +  TL +  PN
Sbjct: 62  LREEWEKEYAALCTSGRTLARPNPN 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,240,124
Number of Sequences: 27780
Number of extensions: 130470
Number of successful extensions: 311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)