Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J02
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   154   4e-39
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   154   4e-39
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   1.9  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   1.9  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   1.9  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   5.8  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    24   7.6  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  154 bits (373), Expect = 4e-39
 Identities = 70/102 (68%), Positives = 80/102 (78%)
 Frame = +1

Query: 40  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGCNDKQG 219
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ G NDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 220 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 345
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIV 102


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  154 bits (373), Expect = 4e-39
 Identities = 70/102 (68%), Positives = 80/102 (78%)
 Frame = +1

Query: 40  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGCNDKQG 219
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ G NDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 220 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 345
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIV 102


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 284 EWPFDIKRRTRLLVRTPCFIGKPC 213
           EWP  +K   +LLVRT  +   PC
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPC 49


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 10  HEGSKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKR 132
           H G+KGL+       S+   G + +  ++ EH + + Y  R
Sbjct: 269 HLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIPVVYSHR 309


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 10  HEGSKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKR 132
           H G+KGL+       S+   G + +  ++ EH + + Y  R
Sbjct: 269 HLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIPVVYSHR 309


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 82  LFEVVDEHKLRIFYEKRMGAEVDADLLGDEW 174
           +FE V EH L   Y+K +  ++D  L+   W
Sbjct: 349 VFEYVLEHTLPHLYQKIIELDMDLKLITINW 379


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -1

Query: 178 LSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPL------PGMKRSTS*LRSVPSN 17
           L  R+L+ + Q Q+ +   +   + + P +Q T+  P       P  +   S  RS+PS+
Sbjct: 259 LHYRQLQSVQQQQKQHQQKKTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIPSS 318

Query: 16  PRAD 5
           P+ +
Sbjct: 319 PKTE 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,664
Number of Sequences: 5004
Number of extensions: 25093
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)