Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J02
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 141 1e-34
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 138 8e-34
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 29 1.3
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 27 3.0
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 27 3.0
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 5.2
11_04_0312 - 16259612-16260231,16260264-16262796 26 6.9
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 6.9
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 26 6.9
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 26 6.9
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 141 bits (342), Expect = 1e-34
Identities = 65/104 (62%), Positives = 80/104 (76%), Gaps = 2/104 (1%)
Frame = +1
Query: 40 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGCNDKQG 219
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ G DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 220 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIV 345
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIV 104
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 138 bits (335), Expect = 8e-34
Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 2/104 (1%)
Frame = +1
Query: 40 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGCNDKQG 219
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ G DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 220 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIV 345
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIV 104
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 129 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSL 22
LF++ T V + F L RC V + +LH C Q+L
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNL 111
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 154 DLLGDEWKGYVLRVAGCNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 321
DL G E + AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 221 DLAGSE-RASQTASAGMRLKEGSHINRSLLTLGKVIRQLSKGRNGHIPYRDSKLTR 275
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 154 DLLGDEWKGYVLRVAGCNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 321
DL G E + AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 224 DLAGSE-RASQTASAGVRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR 278
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +1
Query: 76 QKLF-EVVDEHKLRIFYEKR 132
+KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513
>11_04_0312 - 16259612-16260231,16260264-16262796
Length = 1050
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 142 EVDADLLGDEWKGYV-LRVAGCNDKQGFPM 228
+V +++ WK V L++ GC+ +GFP+
Sbjct: 980 KVGGEIMRFSWKSLVSLKLGGCHSLKGFPI 1009
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 94 VDEHKLRIFYEKRMGAEVDADLLGDEWKGYVL 189
++ + +RIF + + E D++ EW GY+L
Sbjct: 139 IEYYYIRIFENQDVEIEEKVDVIISEWMGYML 170
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 76 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 171
+KL+ EV +LRI YEKR+ + D+ GDE
Sbjct: 492 KKLYKEVKAGERLRIDYEKRLNHLRNQDVKGDE 524
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 226 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERK 318
++ + + R R+ M++GHS YRP G+ K
Sbjct: 432 IRDETMYDPRERIEMAQGHSLYRPSLLGQPK 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,452,993
Number of Sequences: 37544
Number of extensions: 186311
Number of successful extensions: 505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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