Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J02
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   7.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   9.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   9.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 284 EWPFDIKRRTRLLVRTPCFI 225
           EWP  +++R  L +   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 284 EWPFDIKRRTRLLVRTPCFI 225
           EWP  +++R  L +   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 3   ESARGFEGTDRS-HEVERFIPGNGM 74
           E+    EG  ++ + +E ++PGNG+
Sbjct: 401 ENIIDLEGAPQNFYYIEEYLPGNGV 425


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 130 RMGAEVDADLLGDEWKGYV 186
           R+G  + +D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -2

Query: 264 ETYTAVSQDSLFHREALLVVTAGNTENITFPFVA 163
           ET+ A+ +D+  + E   +V     + IT+  ++
Sbjct: 20  ETWEAIKKDAAVNMEGQFLVRQIYDDEITYNIIS 53


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -2

Query: 264 ETYTAVSQDSLFHREALLVVTAGNTENITFPFVA 163
           ET+ A+ +D+  + E   +V     + IT+  ++
Sbjct: 20  ETWEAIKKDAAVNMEGQFLVRQIYDDEITYNIIS 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,461
Number of Sequences: 438
Number of extensions: 2008
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)