Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J01
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    87   1e-18
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    27   1.5  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   2.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.1  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    25   6.1  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   6.1  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    24   8.1  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    24   8.1  

>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 86.6 bits (205), Expect = 1e-18
 Identities = 40/83 (48%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = +2

Query: 41  TNMDFKPKEHQHVRYNPLKDEWILVSPHRCLRPWSGQTEQAPEDQAP--DPNNPLRAGAT 214
           T+  F   E+ H RYNPL D ++L SPHR  RPW G  E+  +D     DP   L  G  
Sbjct: 2   TSKKFDFTEYSHRRYNPLTDSYVLCSPHRAKRPWQGAKEEIKKDDTVKYDPTCYLCPGNI 61

Query: 215 RSNGQRNPNYESTYVFPNDFPAL 283
           R+ G  NP YE+TYVFPND+PA+
Sbjct: 62  RATGFENPKYETTYVFPNDYPAV 84



 Score = 35.5 bits (78), Expect = 0.003
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +3

Query: 327 FESGPAKGRCRVMCFHPDSSMTLPLMTVD 413
           F++   KG+C V+CF P+ ++TLPLM+ +
Sbjct: 109 FKTEGVKGKCFVICFCPNHNLTLPLMSAE 137


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 173 QAPDPNNPLRAGAT 214
           QAP P+NPL AGAT
Sbjct: 210 QAPFPSNPLSAGAT 223


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 155 EQAPEDQAPDPNNPLRAGATRSNGQRNPNYES 250
           + APE QAP P  P  A A   + + + + ++
Sbjct: 13  KHAPEQQAPPPQQPAHAAAPAQDDEPDDDIDA 44


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 259 LPERLSRVTGKSSGPS*GRQSSISNRVPL 345
           L ERL ++ G SS  S   Q+S SN+  L
Sbjct: 639 LTERLQKLAGNSSNVSSSLQTSSSNKSSL 667


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 155 EQAPEDQAPDPNNPLRAGAT 214
           EQAPE+   DP NP +  A+
Sbjct: 289 EQAPENPFRDPENPFKDPAS 308


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 197 MGY*GPELGLRELVPSARSTVEGIGAVTPESIHLSA 90
           +GY  P L  R+  P  +S    +  + P S H SA
Sbjct: 77  LGYFDPSLSERKQSPPGKSLHRFVDNLNPNSSHFSA 112


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 77  VRYNPLKDEWILVSP 121
           V YNPLK +W L  P
Sbjct: 236 VCYNPLKQQWTLDKP 250


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 86  NPLKDEWILVSPHRCLRPWSGQTEQAPEDQAPDPNNPLRAGATRSNGQRNPNYES 250
           N +  E   VSPH  LRP S    +A   + P P++ +  GA+ +    +   ES
Sbjct: 216 NNIPPEINKVSPHDDLRPLSDSRRRA---RRPHPSDTIPPGASMARSDPSQVPES 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,663
Number of Sequences: 5004
Number of extensions: 36592
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)