Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J01
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 32 0.16
10_07_0033 + 12152655-12152906,12153203-12153432,12154126-121541... 29 1.9
04_03_0895 + 20633554-20634480 29 1.9
03_03_0256 + 15898702-15900420 29 1.9
01_06_1034 + 33962813-33963802 29 1.9
11_06_0610 - 25449085-25453284 28 2.6
02_05_0956 - 33064104-33066425 28 2.6
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 28 2.6
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 28 2.6
12_01_0436 - 3436886-3437559,3438738-3438924 27 4.5
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 27 4.5
04_03_0974 + 21367304-21369634 27 5.9
02_05_0162 + 26398252-26399886 27 5.9
02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916 27 5.9
01_06_0355 + 28657833-28660665,28660762-28661126 27 5.9
01_01_0393 + 3025813-3026399,3026493-3027081 27 5.9
06_01_0772 + 5770502-5770619,5771035-5772335 27 7.8
05_02_0107 - 6667944-6668214,6668376-6668524,6668654-6668851,666... 27 7.8
03_02_0840 + 11664382-11664516,11664629-11664737,11665579-116656... 27 7.8
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 27 7.8
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 32.3 bits (70), Expect = 0.16
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +2
Query: 116 SPHRCLRPWSGQTEQAPEDQAPDPNNPLRAGATRSNGQRNP 238
SP R P Q PE Q P P NP++AGA S+ Q+NP
Sbjct: 1947 SPAREPSPNPVQAGAPPEQQNPTPPNPVQAGA--SSEQQNP 1985
>10_07_0033 +
12152655-12152906,12153203-12153432,12154126-12154195,
12154945-12154968
Length = 191
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -2
Query: 305 EGPELFPVTRESRSGRHKSTRNSDSFVHWSGWHQ 204
+GP+L+ + E+RSGR + + + + ++G H+
Sbjct: 120 DGPKLYTIASEARSGRVPARADREHLMTYTGEHE 153
>04_03_0895 + 20633554-20634480
Length = 308
Score = 28.7 bits (61), Expect = 1.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Frame = +2
Query: 107 ILVSPHRCLRPWSGQTEQAPEDQAPDPNNPLRAGATRSNGQRNPN-----YEST----YV 259
+ + H +P SG A + QA P +A A R Q P Y+++ +
Sbjct: 39 VRMESHAIKKPSSGAAAAAAQAQAHQL--PAQAQARREQQQPPPRAPVIIYDASPKIIHA 96
Query: 260 FPNDFPALLERVPGPPEG 313
PN+F AL++R+ GP G
Sbjct: 97 KPNEFMALVQRLTGPGSG 114
>03_03_0256 + 15898702-15900420
Length = 572
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 86 NPLKDEWILVSPHRCLRPWSGQTEQAPEDQAPDPNNPLRAGATR 217
NP DEWIL + PW+G+ E P + + A A +
Sbjct: 178 NPASDEWILRNKQ---SPWAGKKEAPPAELTEEQRQYAEAHAAK 218
>01_06_1034 + 33962813-33963802
Length = 329
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 128 CLRPWSGQTEQAPEDQAPDPNNPLRAGATRSN 223
C+ PW Q P + P P++ R+G+TRS+
Sbjct: 218 CIIPWLVQHNSCPVCRHPLPSSSHRSGSTRSS 249
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 164 PEDQAPDPNNPLRAGATRSNGQRNPNYESTYVFP--NDFPALLERVPGPPEG 313
PE+++P P++P ++ + ++ P E + P P E+ P PP G
Sbjct: 776 PEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSG 827
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 248 STYVFPNDFPALLERVPGPPEGDNLLFRIGSR*RTLQSNVLPPGLVHDLTTDD 406
+ Y N A++ V G G F +GS +N L PGLV++ TTDD
Sbjct: 589 TAYEVDNGGNAIMSSVNGRAAGP---FELGSG-HVDPNNALDPGLVYNATTDD 637
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 168 KTKLRTLITHYELVPPAPMDKGIRITSRL 254
+ LR L T E+V P+P G+R++SR+
Sbjct: 979 ENNLRALETAAEVVVPSPAGTGLRVSSRI 1007
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 146 GQTEQAPEDQAPDPNNPLRAGATRSNGQRNPNYESTY 256
G P AP PN P GA G P+Y+ Y
Sbjct: 346 GPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGY 382
>12_01_0436 - 3436886-3437559,3438738-3438924
Length = 286
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 140 WSGQTEQAPEDQAPDPNNPLRAGATRSNGQRNP 238
WS +E A AP P P AG S GQ +P
Sbjct: 41 WSYCSELAAAAAAPSPAAPFPAGYVPSPGQHSP 73
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 208 CHPLQWTKESELRVDLCLPERLSRV 282
CHP+QW K S +R + E + V
Sbjct: 834 CHPVQWVKRSAVRFVVACSESIGPV 858
>04_03_0974 + 21367304-21369634
Length = 776
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 230 RNPNYESTYVFPNDFPALLERVPGPPEGDNLLFRIGSR*RTLQSNVLPPGLVHDLTTDD 406
R+ + YV N A L +PG G L + G + PGLV+D+T DD
Sbjct: 574 RSAMMTTAYVKDNADDADLVSMPGGSPGTPLDYGSG---HVSPNQATDPGLVYDITADD 629
>02_05_0162 + 26398252-26399886
Length = 544
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 352 RPLAGPDSK*KIVSLRRARNSFQ*RGKVVREDISRLVIRIPLSIGAGGTSS*WVIRVRSL 173
RP AGP + + + + F G+ R D R VIR+ L + G +V R R L
Sbjct: 460 RPDAGPACRHDLEAYLHLIDGFTGTGRPFRHDARRSVIRL-LQLQRGNVKKEYVNRAREL 518
>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
Length = 722
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 275 PALLERVPGPPEGDNLLFRIGSR*RTLQS 361
PAL+E+ P P D+ +I SR TL S
Sbjct: 47 PALVEKTPSPSSADHRSPKISSRISTLPS 75
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 41 TNMDFKPKEHQHVRYNPLKDEWILVSPHRCL 133
+N+DFK Q++ L DEW+L S CL
Sbjct: 838 SNLDFKALVLQYMPNGSL-DEWLLYSDRHCL 867
>01_01_0393 + 3025813-3026399,3026493-3027081
Length = 391
Score = 27.1 bits (57), Expect = 5.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 257 HKSTRNSDSFVHWSGWHQLVMGY 189
H T++ F+HW HQ+ +G+
Sbjct: 276 HHRTQDEPPFLHWDARHQVAIGH 298
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 257 HKSTRNSDSFVHWSGWHQLVMGY 189
H T++ F+HW HQ+ +G+
Sbjct: 99 HLRTQDEPPFLHWDARHQVAIGH 121
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 26.6 bits (56), Expect = 7.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Frame = +2
Query: 122 HRCLRPWSGQTEQAPEDQAPDP------NNPLRAGATRSNGQRNPNYESTYVFPNDFPAL 283
H+CLRPWS + QA A NN T S+ + E + + NDF L
Sbjct: 58 HQCLRPWSVRATQASSTGASGAGKGGGLNNLQEEEITSSSSTKIDVIEDSSI--NDFLFL 115
Query: 284 LERVPGPPEGDNLL 325
+ G P NL+
Sbjct: 116 MAVSLGKPPVVNLV 129
>05_02_0107 -
6667944-6668214,6668376-6668524,6668654-6668851,
6668989-6669250,6669378-6670327,6670907-6671022,
6671121-6671280
Length = 701
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 236 DSFVH-WSGWHQLVMGY*GPELGLRELVPSARSTVEGIGAV 117
++F H WSG+ MGY EL+P R ++G+G +
Sbjct: 200 EAFEHAWSGYRNYAMGY-------DELMPLTRRGIDGLGGL 233
>03_02_0840 +
11664382-11664516,11664629-11664737,11665579-11665676,
11665757-11665825,11665921-11666036,11666113-11666167,
11666250-11666370,11666461-11666603,11666691-11666792
Length = 315
Score = 26.6 bits (56), Expect = 7.8
Identities = 23/79 (29%), Positives = 34/79 (43%)
Frame = +2
Query: 65 EHQHVRYNPLKDEWILVSPHRCLRPWSGQTEQAPEDQAPDPNNPLRAGATRSNGQRNPNY 244
EHQ + L+ W L P+R + P + + Q DP+ R G S N +
Sbjct: 135 EHQ----DALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFIS--LENLIF 188
Query: 245 ESTYVFPNDFPALLERVPG 301
+ +P F ALL +V G
Sbjct: 189 FARN-YPGSFQALLNKVQG 206
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 128 CLRPWSGQTEQAPEDQAPDP 187
CLR W GQ A + PDP
Sbjct: 17 CLREWKGQPAAAAAFRVPDP 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,444,027
Number of Sequences: 37544
Number of extensions: 272580
Number of successful extensions: 779
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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