Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I24
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   1.8  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    24   2.3  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    23   4.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    22   9.3  

>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 163 ACDNNSTCCVDIFYRYIDIKTVDCIFLR 80
           AC NN+ C ++I   Y    ++D I+ R
Sbjct: 143 ACYNNAECQLNIAMEYCGAGSLDAIYKR 170


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 99  TVLMSIYR*KISTQHVELL 155
           T L+ IY  +IS  HVELL
Sbjct: 382 TKLLEIYSYRISAHHVELL 400


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 148 STCCVDIFYRYIDIKTVDCIFL 83
           S CCV  F  Y+D  +++  +L
Sbjct: 34  SYCCVSYFINYLDRSSINNAYL 55


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 137 CRYFLSIYRH*NSRLYL 87
           CR F SI+   N R+YL
Sbjct: 253 CRLFRSIWNRSNFRIYL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,375
Number of Sequences: 5004
Number of extensions: 7635
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)