Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I24
         (180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    29   0.70 

>02_05_1349 + 35841694-35843738,35844506-35844624,35844932-35845075,
            35845189-35845310,35845474-35845609,35845861-35845957,
            35846727-35846899,35847099-35847262,35847466-35847537,
            35847833-35847928,35847999-35848124
          Length = 1097

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = -3

Query: 157  DNNSTCCVDIFYRYIDIKTVDCIFLRNP------INYLLKMILFKSTF 32
            D   T    IFYRY+D   +D  F+  P      +N L + +LF   F
Sbjct: 897  DGVGTVTASIFYRYVDQLVIDRAFIHGPCPFCPLMNGLFRELLFSILF 944


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,354
Number of Sequences: 37544
Number of extensions: 38806
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)