Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I24
         (180 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    29   0.44 
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    29   0.44 
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    29   0.44 
Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    25   7.1  
AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical...    25   7.1  
Z78539-2|CAB01729.2|  410|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AC024751-2|AAN39663.1|  272|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical protein
            F33C8.1b protein.
          Length = 1234

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 157  DNNSTCCVDIFYRYIDIKTVDCIFLRNPINYLLKMILFKSTFILYLTIA 11
            D+N+T  V ++     ++ V       PIN++L  ++F + FI+ L +A
Sbjct: 1108 DSNTTFFVRVYNFNTPVQIVVSFAQSPPINWVLFFVIFAACFIVLLVVA 1156


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical protein
            F33C8.1a protein.
          Length = 1271

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 157  DNNSTCCVDIFYRYIDIKTVDCIFLRNPINYLLKMILFKSTFILYLTIA 11
            D+N+T  V ++     ++ V       PIN++L  ++F + FI+ L +A
Sbjct: 1145 DSNTTFFVRVYNFNTPVQIVVSFAQSPPINWVLFFVIFAACFIVLLVVA 1193


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin protein.
          Length = 1329

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 157  DNNSTCCVDIFYRYIDIKTVDCIFLRNPINYLLKMILFKSTFILYLTIA 11
            D+N+T  V ++     ++ V       PIN++L  ++F + FI+ L +A
Sbjct: 1145 DSNTTFFVRVYNFNTPVQIVVSFAQSPPINWVLFFVIFAACFIVLLVVA 1193


>Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical
           protein M117.1 protein.
          Length = 523

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 76  PINYLLKMILFKSTFILYL 20
           PI Y+L +ILF ST I +L
Sbjct: 248 PIYYILSIILFISTIIWFL 266


>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 136 VDIFYRYIDIKTVDCIFLRNPINYLLKMILFKSTFILYLTI 14
           + + +  I   T+ C FLRN  N +  +I   S   L L +
Sbjct: 142 ISLIFLLITFGTISCYFLRNASNTIYVVICLISLNALALVV 182


>AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14b protein.
          Length = 304

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 136 VDIFYRYIDIKTVDCIFLRNP 74
           + IF+R+ +   + CIF  NP
Sbjct: 21  IRIFWRFFEKNRISCIFQENP 41


>Z78539-2|CAB01729.2|  410|Caenorhabditis elegans Hypothetical
           protein C31E10.3 protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 160 CDNNSTCCVDIFYRYIDIKTVDCI 89
           C+NN+    D+ Y + ++K   CI
Sbjct: 154 CENNNYAAFDVIYVHKNLKDCGCI 177


>Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical
           protein E04D5.2 protein.
          Length = 404

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -3

Query: 88  FLRNPINYLLKMILFKSTF---ILYLTIASC 5
           FL+ PIN+ L M +F+ +    I   T+A+C
Sbjct: 40  FLKYPINFQLLMAVFRRSLPSSIFLATLATC 70


>AC024751-2|AAN39663.1|  272|Caenorhabditis elegans Hypothetical
           protein Y18H1A.11 protein.
          Length = 272

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 88  RYNRLF*CRYIDRKYRHSMLSC 153
           RY  +  CRY+D  Y+ S  +C
Sbjct: 102 RYEAIRHCRYVDEVYKASPWTC 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,732
Number of Sequences: 27780
Number of extensions: 42191
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)