Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I23
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   0.93 
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    26   1.6  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   3.8  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    24   5.0  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    24   5.0  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    24   6.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        23   8.7  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    23   8.7  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 228  NDHLTHHQAQLGERLYPRVHSLHPTFAGK 314
            N  L  H  +L ERL  R H+L  TF  K
Sbjct: 924  NSELKLHCFELSERLREREHTLQQTFGDK 952


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 168 PQAAPGTDAAGYS*ERSGGHND-HLTHHQAQLGERLYPRVHSLHPTF 305
           PQ   GT+A+GYS +R+   +D   +     L E+L   +   H  +
Sbjct: 253 PQTPMGTEASGYSFDRTPHKSDIQASDRLNALNEKLLQGIQQSHQPY 299


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTFAGKIT 320
           LGE LYP+V       +GKIT
Sbjct: 589 LGELLYPKVFVREEKLSGKIT 609


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 166 PHRLHLVLMPPVIVE 210
           PHRL+  ++PP+++E
Sbjct: 61  PHRLYRGILPPILME 75


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 150 DARPYSPQAAPGTDAAGYS*ERSGGHN 230
           D  P+SP    G+   GY     GG N
Sbjct: 422 DGVPFSPSMPSGSSRGGYHGRNPGGPN 448


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 243 HHQAQLGERLYPRVHSLHPTFAGKI 317
           H   +L  R YP VH++   F  K+
Sbjct: 517 HPSLKLTRRYYPHVHNIDGFFVAKL 541


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 228  NDHLTHHQAQLGERLYPRVHSL 293
            N+ L   + +L ER+YPR++S+
Sbjct: 3232 NNLLKLEEYKLSERVYPRLYSI 3253


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 186 YQVQPVGNTVGRLH*AHAVA 127
           +Q  P GN  G  H  HAV+
Sbjct: 33  FQWNPTGNQAGNQHWGHAVS 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,398
Number of Sequences: 5004
Number of extensions: 14483
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)