Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I23
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943...    29   0.62 
02_03_0394 + 18546089-18546323,18546784-18546986,18547598-185477...    29   0.81 
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202     28   1.4  
04_03_0515 + 16698589-16701066                                         27   4.3  
08_02_0596 + 19117191-19117318,19117729-19117825,19118685-191187...    26   5.7  
01_07_0277 + 42438359-42438811,42439194-42439817                       26   5.7  

>03_02_0555 +
           9431451-9431688,9432685-9432803,9432886-9433079,
           9433174-9433430,9433544-9433650,9433715-9433888,
           9434359-9434490,9434776-9434955,9435062-9435265
          Length = 534

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTFAGKIT 320
           LG RLYP V   HP  A KIT
Sbjct: 455 LGNRLYPLVERHHPDLASKIT 475


>02_03_0394 +
           18546089-18546323,18546784-18546986,18547598-18547787,
           18548624-18549015,18549495-18550055
          Length = 526

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 183 GTDAAGYS*ERSGGHNDHLTHHQAQLGERLYPRVHSL 293
           G  +AG   ER GG+ D   HHQ Q      PRV  L
Sbjct: 40  GGSSAGRHGERGGGYPDLHHHHQQQQLPMAAPRVEKL 76


>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
          Length = 711

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 210 ERSGGHNDHLTHHQAQLGERLYPRV 284
           ER+ GH  H  HHQ+  G  L  R+
Sbjct: 426 ERAHGHRSHRDHHQSSRGSTLSSRL 450


>04_03_0515 + 16698589-16701066
          Length = 825

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 294 EANVLLDKVFRRVVPDDVLDDHYDLRYVLNYNRRHQ 187
           EAN+LL+K+F   V  D+L  +  +R +    RR +
Sbjct: 663 EANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQE 698


>08_02_0596 +
           19117191-19117318,19117729-19117825,19118685-19118788,
           19119318-19119633,19120379-19120486
          Length = 250

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 203 ITGGISTRCSLWGIRSGVYTEHTPWLP 123
           +T G S   +LW  RSG      PW P
Sbjct: 177 VTSGRSWTYNLWMARSGSARRRLPWTP 203


>01_07_0277 + 42438359-42438811,42439194-42439817
          Length = 358

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 216 SGGHNDHLTHHQAQLGERLYPRVH-SLHPTFAGKI 317
           SGGH   L H  +  G RL+PR   +++ TFAG++
Sbjct: 207 SGGHTVGLAHCSSFEG-RLFPRRDPAMNATFAGRL 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,786,638
Number of Sequences: 37544
Number of extensions: 112744
Number of successful extensions: 330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)