Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I23
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.52 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   8.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 0.52
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 121 QGSHGVCSV*TPDRIPHRLHLVLMPP 198
           QGS G+ S     R+ H LH  L+PP
Sbjct: 343 QGSAGLPSAILAMRLSHPLHGNLLPP 368


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 178 HLVLMPPVIVEN 213
           H  +MPPVI+EN
Sbjct: 232 HRGVMPPVILEN 243


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 178 HLVLMPPVIVEN 213
           H  +MPPVI+EN
Sbjct: 232 HRGVMPPVILEN 243


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 23  TKRRWSCSFEGRCKAY 70
           +++R+SCS E   K+Y
Sbjct: 268 SRKRYSCSREREQKSY 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,927
Number of Sequences: 438
Number of extensions: 1265
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)