Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I19
         (398 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07881-1|AAA28871.1|  248|Drosophila melanogaster ribosomal prot...   229   8e-61
L02075-1|AAB05985.1|  248|Drosophila melanogaster ribosomal prot...   229   8e-61
L02074-4|AAB05982.1|  248|Drosophila melanogaster ribosomal prot...   229   8e-61
L01658-1|AAC34306.1|  248|Drosophila melanogaster ribosomal prot...   229   8e-61
AE014298-1078|AAN09218.1|  248|Drosophila melanogaster CG10944-P...   229   8e-61
AE014298-1079|AAN09219.1|  251|Drosophila melanogaster CG10944-P...   225   1e-59
L02074-3|AAB05984.1|  200|Drosophila melanogaster protein ( Dros...   180   6e-46
L02074-2|AAB05983.1|  200|Drosophila melanogaster protein ( Dros...   180   6e-46
AY058620-1|AAL13849.1|  217|Drosophila melanogaster LD31286p pro...   164   4e-41
AE014298-1080|AAF46288.1|  217|Drosophila melanogaster CG10944-P...   164   4e-41
AE014298-1077|AAS65274.1|  135|Drosophila melanogaster CG33222-P...    45   3e-05
AE014298-1076|AAF46287.3|  135|Drosophila melanogaster CG11386-P...    45   3e-05
BT022735-1|AAY55151.1|  149|Drosophila melanogaster IP07614p pro...    43   1e-04
BT022511-1|AAY54927.1|  147|Drosophila melanogaster IP07914p pro...    43   1e-04
AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA...    30   0.99 

>L07881-1|AAA28871.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score =  229 bits (561), Expect = 8e-61
 Identities = 102/122 (83%), Positives = 115/122 (94%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRKGAQE 391
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN++VLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 392 IP 397
           IP
Sbjct: 121 IP 122


>L02075-1|AAB05985.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score =  229 bits (561), Expect = 8e-61
 Identities = 102/122 (83%), Positives = 115/122 (94%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRKGAQE 391
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN++VLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 392 IP 397
           IP
Sbjct: 121 IP 122


>L02074-4|AAB05982.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score =  229 bits (561), Expect = 8e-61
 Identities = 102/122 (83%), Positives = 115/122 (94%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRKGAQE 391
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN++VLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 392 IP 397
           IP
Sbjct: 121 IP 122


>L01658-1|AAC34306.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score =  229 bits (561), Expect = 8e-61
 Identities = 102/122 (83%), Positives = 115/122 (94%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRKGAQE 391
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN++VLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 392 IP 397
           IP
Sbjct: 121 IP 122


>AE014298-1078|AAN09218.1|  248|Drosophila melanogaster CG10944-PB,
           isoform B protein.
          Length = 248

 Score =  229 bits (561), Expect = 8e-61
 Identities = 102/122 (83%), Positives = 115/122 (94%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRKGAQE 391
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN++VLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 392 IP 397
           IP
Sbjct: 121 IP 122


>AE014298-1079|AAN09219.1|  251|Drosophila melanogaster CG10944-PC,
           isoform C protein.
          Length = 251

 Score =  225 bits (551), Expect = 1e-59
 Identities = 100/120 (83%), Positives = 113/120 (94%)
 Frame = +2

Query: 38  LNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFP 217
           LNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQGFP
Sbjct: 6   LNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFP 65

Query: 218 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRKGAQEIP 397
           MKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN++VLALV+++KG ++IP
Sbjct: 66  MKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIP 125


>L02074-3|AAB05984.1|  200|Drosophila melanogaster protein (
           Drosophila melanogasterribosomal protein S6 gene and two
           potential alternativelyspliced proteins, complete cds.
           ).
          Length = 200

 Score =  180 bits (438), Expect = 6e-46
 Identities = 84/116 (72%), Positives = 99/116 (85%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRK 379
           FPMKQGVLT+ R+RLL  K HSC+ PR +  RK K+VR   V+AN++ L LV+++K
Sbjct: 61  FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 115


>L02074-2|AAB05983.1|  200|Drosophila melanogaster protein (
           Drosophila melanogasterribosomal protein S6 gene and two
           potential alternativelyspliced proteins, complete cds.
           ).
          Length = 200

 Score =  180 bits (438), Expect = 6e-46
 Identities = 84/116 (72%), Positives = 99/116 (85%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRK 379
           FPMKQGVLT+ R+RLL  K HSC+ PR +  RK K+VR   V+AN++ L LV+++K
Sbjct: 61  FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 115


>AY058620-1|AAL13849.1|  217|Drosophila melanogaster LD31286p
           protein.
          Length = 217

 Score =  164 bits (398), Expect = 4e-41
 Identities = 72/91 (79%), Positives = 84/91 (92%)
 Frame = +2

Query: 125 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 304
           MG  V+AD+LGDEWKGY LR+AGGNDKQGFPMKQGVLT+ RVRLL+ KGHSCYRPRR GE
Sbjct: 1   MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGE 60

Query: 305 RKRKSVRGCIVDANLTVLALVIVRKGAQEIP 397
           RKRKSVRGCIVDAN++VLALV+++KG ++IP
Sbjct: 61  RKRKSVRGCIVDANMSVLALVVLKKGEKDIP 91


>AE014298-1080|AAF46288.1|  217|Drosophila melanogaster CG10944-PA,
           isoform A protein.
          Length = 217

 Score =  164 bits (398), Expect = 4e-41
 Identities = 72/91 (79%), Positives = 84/91 (92%)
 Frame = +2

Query: 125 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 304
           MG  V+AD+LGDEWKGY LR+AGGNDKQGFPMKQGVLT+ RVRLL+ KGHSCYRPRR GE
Sbjct: 1   MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGE 60

Query: 305 RKRKSVRGCIVDANLTVLALVIVRKGAQEIP 397
           RKRKSVRGCIVDAN++VLALV+++KG ++IP
Sbjct: 61  RKRKSVRGCIVDANMSVLALVVLKKGEKDIP 91


>AE014298-1077|AAS65274.1|  135|Drosophila melanogaster CG33222-PA
           protein.
          Length = 135

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +2

Query: 239 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRK 379
           N R+RLL  K HSC+ PR +  RK K+VR   V+AN++ L LV+++K
Sbjct: 5   NRRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 50


>AE014298-1076|AAF46287.3|  135|Drosophila melanogaster CG11386-PA
           protein.
          Length = 135

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +2

Query: 239 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRK 379
           N R+RLL  K HSC+ PR +  RK K+VR   V+AN++ L LV+++K
Sbjct: 5   NRRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 50


>BT022735-1|AAY55151.1|  149|Drosophila melanogaster IP07614p
           protein.
          Length = 149

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 245 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRK 379
           R+RLL  K HSC+ PR +  RK K+VR   V+AN++ L LV+++K
Sbjct: 21  RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 64


>BT022511-1|AAY54927.1|  147|Drosophila melanogaster IP07914p
           protein.
          Length = 147

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 245 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLTVLALVIVRK 379
           R+RLL  K HSC+ PR +  RK K+VR   V+AN++ L LV+++K
Sbjct: 19  RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 62


>AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA
            protein.
          Length = 1399

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 209  PACRYRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQ 78
            PA    +QH +H L+  R ++    + P   HR  GA A  P+Q
Sbjct: 1035 PASNLNKQHADHYLANERKDNALDYKPPVPPHRNVGARACLPVQ 1078


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,239,316
Number of Sequences: 53049
Number of extensions: 377163
Number of successful extensions: 826
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)