Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I16
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...   125   1e-30
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...   123   7e-30
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   1.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   1.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   3.4  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   3.4  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   4.5  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    24   5.9  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score =  125 bits (302), Expect = 1e-30
 Identities = 55/100 (55%), Positives = 77/100 (77%)
 Frame = +3

Query: 9   DRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVREL 188
           DR+ ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P+G +  LV NV ++
Sbjct: 20  DRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDV 79

Query: 189 EILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNA 308
           E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA
Sbjct: 80  ELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNA 119


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score =  123 bits (296), Expect = 7e-30
 Identities = 54/100 (54%), Positives = 76/100 (76%)
 Frame = +3

Query: 9   DRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVREL 188
           D + ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P+G +  LV NV ++
Sbjct: 20  DLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDV 79

Query: 189 EILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNA 308
           E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA
Sbjct: 80  ELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNA 119


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 255  VFSRRRHVRFPRSISCSASSGSPVRERCGP 166
            VFS  R++RF  S   S  S SP  +  GP
Sbjct: 1296 VFSMLRYIRFHNSKQSSKHSPSPTLKSVGP 1325


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 3   TRDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 116
           TRD YD+L  NW++   ++    +RFK      NI  G
Sbjct: 826 TRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 145 PAVFVKSWSTTFANWR---S**CRTGNTARKSHM 237
           P   V +W  T ANW    +  C TGNT  ++++
Sbjct: 447 PLSTVPAWQETLANWTPDLNSICYTGNTESRANI 480


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 93  LMPNIGYGSNKKTRHMLPSGFRKVLVHNVRE 185
           ++ NIGYG+ K +   +    +K  +H++ E
Sbjct: 533 ILYNIGYGNPKASNDEIVEAAKKAKIHDIIE 563


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 192 SPVRERCGPRLYENRWVACDGSSY-LNHNQCWASS 91
           SP RE C     + +  AC+G+S+ L H    ASS
Sbjct: 28  SPEREYCSDCPLQAKGSACNGNSHSLKHETNGASS 62


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 219 CAEIAHGVSSKKRKAIVERAQQLSIRVTN 305
           C  + HGV   + K ++ER    +   +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,268,593
Number of Sequences: 5004
Number of extensions: 24416
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)