Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_I16
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 155 9e-39
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 150 2e-37
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 146 3e-36
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 109 6e-25
02_02_0355 + 9312814-9313650 30 0.43
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 27 4.0
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666... 27 4.0
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 27 4.0
11_03_0128 - 10437407-10438049,10438097-10438272 26 5.2
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 26 5.2
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362... 26 5.2
06_03_0538 + 21913175-21914218 26 6.9
03_02_0738 - 10824121-10825572 26 6.9
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 25 9.2
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 25 9.2
04_04_0437 + 25193263-25194627 25 9.2
03_05_0499 + 24940443-24940994 25 9.2
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 155 bits (375), Expect = 9e-39
Identities = 72/99 (72%), Positives = 83/99 (83%)
Frame = +3
Query: 9 DRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVREL 188
DRY LK +WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LP+ F+K +VHNV EL
Sbjct: 24 DRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSEL 83
Query: 189 EILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTN 305
E+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN
Sbjct: 84 ELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTN 122
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 150 bits (364), Expect = 2e-37
Identities = 69/98 (70%), Positives = 82/98 (83%)
Frame = +3
Query: 9 DRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVREL 188
DRY LK +WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LP+ F+K +VHNV EL
Sbjct: 24 DRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSEL 83
Query: 189 EILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVT 302
E+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 84 ELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 146 bits (354), Expect = 3e-36
Identities = 67/91 (73%), Positives = 78/91 (85%)
Frame = +3
Query: 33 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 212
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 213 KYCAEIAHGVSSKKRKAIVERAQQLSIRVTN 305
YCAEIAH VS+KKRK IVERA QL I VTN
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTN 189
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 109 bits (261), Expect = 6e-25
Identities = 48/68 (70%), Positives = 58/68 (85%)
Frame = +3
Query: 9 DRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVREL 188
DRY LK +WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LP+ F+K +VHNV EL
Sbjct: 346 DRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSEL 405
Query: 189 EILMMQNR 212
E+LMM NR
Sbjct: 406 ELLMMHNR 413
>02_02_0355 + 9312814-9313650
Length = 278
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +2
Query: 95 DAQHWLWFK*EDPSHATQRFS*SLGPQRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSR 271
D+Q WL +D HA P+ GD D + E R R W EG+ R
Sbjct: 3 DSQQWLHGDGDDVEHAAAMTMTEAAPRDDEPGDRRDVDDENERRQRRW----TAEGFGR 57
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 150 RWVACDGSSYLNHNQC 103
RW+ CDG S+ H C
Sbjct: 209 RWIGCDGCSHWTHAGC 224
>10_08_0371 +
17265691-17265788,17265873-17265971,17266586-17266628,
17267250-17267321,17267400-17267495,17267609-17267842,
17267914-17268097,17268247-17268358,17268447-17268533,
17268703-17268841,17269628-17269718,17270045-17270154,
17270309-17270413,17270982-17271055,17271379-17271454,
17271786-17272022,17272419-17272490,17273082-17273153,
17273240-17273304,17273306-17273383,17273384-17273486,
17273769-17273858,17274873-17274980,17275063-17275113,
17276126-17276203,17276284-17276346,17276944-17277140,
17277243-17277312,17277640-17277828
Length = 1030
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +1
Query: 52 VSTTEYVGASRVNT*-CPTLVMVQIRRPVTCYPAVFVKSW---STTFANWRS**CRTGNT 219
V+ T Y G + T C L+ +RR TC V + SW + FA+ RS TG
Sbjct: 607 VALTTYQGEIELQTLTCQKLLATVVRRKHTCTYVVQLDSWRDLTRAFASGRSLFSLTGRL 666
Query: 220 AR 225
R
Sbjct: 667 QR 668
>09_06_0352 + 22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 274 RSTIAFRFFEETPCAISAQYFLFCIIRISSSRTLW 170
R+T+AF+ F T A+ F+ I ++ S+ +LW
Sbjct: 900 RNTLAFKGFGRTNKETVAELFVSLISKLLSAESLW 934
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 202 CRTGNTARKSHMASPRKNGR 261
C + TAR+ + SPRK GR
Sbjct: 163 CSSSTTARRISITSPRKRGR 182
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 96 MPNIGYGSNKKTRHMLPSGFRKVLVHNVRELE 191
M GYG+ +++RH L G K +V LE
Sbjct: 778 MKERGYGNRRRSRHRLTPGTVKFAAFHVLSLE 809
>04_01_0272 +
3624910-3625247,3625286-3625853,3625920-3626895,
3627053-3627087
Length = 638
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 98 HQVLTLEAPTYSVVDTSRFTPVPLK 24
HQ++ AP Y+ VD + P+PL+
Sbjct: 74 HQLVPFWAPFYTSVDQTTSPPIPLR 98
>06_03_0538 + 21913175-21914218
Length = 347
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 261 PSVFSRRRHVRFPRSISCSASSGSPVRERCGPRLYENR 148
PS S +RHVRF + + +A+S P PRL R
Sbjct: 298 PSASSSQRHVRFSTAAAAAAAS-CPTSPCVTPRLARAR 334
>03_02_0738 - 10824121-10825572
Length = 483
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 9 DRYDKLKRNWRKPRGIDNR 65
DRY++++R WR P D+R
Sbjct: 369 DRYEEMRRQWRHPGLGDDR 387
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 249 SRRRHVRFPRSISCSASSGSPVRERCGPRLYENRW 145
SRRR PR C+ S + R G R+ RW
Sbjct: 194 SRRRRRGLPRWAVCAVCHRSSMMARKGERMVRWRW 228
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 246 RRRHVRFPRSISCSASSGSPVRERCGPRLYENRWVACD 133
+R HV P S+S ++ +P+ P + E WV CD
Sbjct: 548 QRMHV--PPSVSAPTANAAPMLP--APVVIEEHWVCCD 581
>04_04_0437 + 25193263-25194627
Length = 454
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 109 VMVQIRRPVTCYPAVFVKSWS 171
V+ + RR VTC P + SWS
Sbjct: 90 VIQKFRRTVTCDPQNIISSWS 110
>03_05_0499 + 24940443-24940994
Length = 183
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 173 QRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSRACPAA 286
+R++ GD DD + L G T E+ S + PAA
Sbjct: 45 KRAQVGDDDDDVESALGGATTVTTYEQAAAASSSSPAA 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,548,890
Number of Sequences: 37544
Number of extensions: 173242
Number of successful extensions: 527
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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