Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I16
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   139   4e-34
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    30   0.38 
AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical...    27   3.5  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    26   4.7  
Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical pr...    26   6.2  
U41554-1|AAA83296.2|  556|Caenorhabditis elegans Hypothetical pr...    26   6.2  
AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical ...    26   6.2  
Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p...    25   8.1  
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p...    25   8.1  
U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical p...    25   8.1  
L16621-14|AAA28224.3|  612|Caenorhabditis elegans Glycosylation ...    25   8.1  
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    25   8.1  
AF031833-1|AAC13669.1|  612|Caenorhabditis elegans GLY3 protein.       25   8.1  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  139 bits (336), Expect = 4e-34
 Identities = 60/99 (60%), Positives = 83/99 (83%)
 Frame = +3

Query: 9   DRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVREL 188
           DRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP+G++KVLV NV++L
Sbjct: 25  DRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLPNGYKKVLVQNVKDL 84

Query: 189 EILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTN 305
           ++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN
Sbjct: 85  DMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTN 123


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 87  QYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQN 209
           QYLM NI        R   PSGF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical
           protein Y116A8C.21 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 88  NT*CPTLVMVQIRRPVTCYPAVFVKSWSTTFANWRS**CRTG 213
           N+ CP      IRRPV        +SWS T   W +  C+ G
Sbjct: 101 NSTCPAFPETDIRRPVN-------ESWSKTENGWTTRLCKNG 135


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
           protein C18H2.5 protein.
          Length = 1139

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 111 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKY 218
           +  NK+ +         +L H VREL+ L M+ RKY
Sbjct: 604 FNENKQVKEFWSGSPGYLLEHVVRELDNLNMEARKY 639


>Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical
           protein R04B5.9 protein.
          Length = 536

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 113 ITNVGHQVLTLEAPTYSVVDTSRFTPVPLKFIITIPR 3
           +   GH V  LE     +VD+++   +  K I+ +P+
Sbjct: 46  LAKAGHNVTLLEIDFLGIVDSTKSAKLVKKTIVRVPK 82


>U41554-1|AAA83296.2|  556|Caenorhabditis elegans Hypothetical
           protein F57C12.2 protein.
          Length = 556

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 61  TEYVGASRVNT*CPTLVMVQIRR-PVTCYPAVFVKSWSTTFAN 186
           TE +  +R    C   +  +++  P T Y   F K+WS  F N
Sbjct: 399 TEVIKCNRTIMCCQIALNFKMKYLPTTVYDHTFFKAWSIVFQN 441


>AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical
           protein Y67H2A.4a protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 33  NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNK 125
           N +K + +  RV+RRFKG+ L   I +G  K
Sbjct: 421 NEKKQKHMLKRVKRRFKGENL-KGISFGETK 450


>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 57  DNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVL 167
           D  V  R  G Y          KKTR  LPSG +KV+
Sbjct: 122 DRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVV 158


>Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical
           protein C46F11.5b protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 210 RKYCAEIAHGVSSKKRKAIVERAQQLSIRV 299
           R+ C E+ +G+ +    AIVER ++++ R+
Sbjct: 191 RESCRELVNGIKNWIHVAIVERTKRVAQRI 220


>Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical
           protein C46F11.5a protein.
          Length = 488

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 210 RKYCAEIAHGVSSKKRKAIVERAQQLSIRV 299
           R+ C E+ +G+ +    AIVER ++++ R+
Sbjct: 191 RESCRELVNGIKNWIHVAIVERTKRVAQRI 220


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 222 RSISCSASSGSPVRERCGPRLYENRWVACDGSSYL 118
           R I+C  +   P    C  +LY NR   C    ++
Sbjct: 579 RIIACERNDDCPSTHTCTRQLYSNRTSCCPSRKWI 613


>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
           protein R06F6.8a protein.
          Length = 1468

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 219 SISCSASSGSPVRERCGPRLYENRWVAC 136
           S S ++   SP+ + C   L    W+AC
Sbjct: 697 STSTTSEPSSPMNQSCSSHLSNALWIAC 724


>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
           protein R06F6.8b protein.
          Length = 1470

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 219 SISCSASSGSPVRERCGPRLYENRWVAC 136
           S S ++   SP+ + C   L    W+AC
Sbjct: 697 STSTTSEPSSPMNQSCSSHLSNALWIAC 724


>U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical
           protein F59A3.9 protein.
          Length = 482

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 100 PTLVMVQIRRPVTCYPAVFVKSW 168
           P L ++Q+R+ ++CY  +F K++
Sbjct: 133 PFLKLMQLRKELSCYYTIFSKAY 155


>L16621-14|AAA28224.3|  612|Caenorhabditis elegans Glycosylation
           related protein 3 protein.
          Length = 612

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 105 IGYGSNKKTRHMLPSGFRKVLVHN-VRELEILMMQNRKYCAEIAHGVSSKKRKAIVER 275
           +G+   K+T +  P G  KV+ HN  R  E+ M + + +  ++     + +   + ER
Sbjct: 396 VGHVFRKQTPYTFPGGTAKVIHHNAARTAEVWMDEYKAFFYKMVPAARNVEAGDVSER 453


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
           protein Y39F10A.3 protein.
          Length = 309

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 111 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAE 227
           YG  +K + +LPSG  + L+ ++++    +MQ RK   E
Sbjct: 29  YGFYEKPKEVLPSGTDQELLLDIQDKINGLMQTRKTSPE 67


>AF031833-1|AAC13669.1|  612|Caenorhabditis elegans GLY3 protein.
          Length = 612

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 105 IGYGSNKKTRHMLPSGFRKVLVHN-VRELEILMMQNRKYCAEIAHGVSSKKRKAIVER 275
           +G+   K+T +  P G  KV+ HN  R  E+ M + + +  ++     + +   + ER
Sbjct: 396 VGHVFRKQTPYTFPGGTAKVIHHNAARTAEVWMDEYKAFFYKMVPAARNVEAGDVSER 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,064,070
Number of Sequences: 27780
Number of extensions: 140487
Number of successful extensions: 407
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)