Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I15
         (247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595...    31   0.098
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283...    29   0.69 
04_04_0683 - 27234137-27234486,27234645-27234756,27234889-272349...    29   0.69 
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522...    27   2.8  
10_07_0100 + 12861588-12862601                                         27   2.8  
02_04_0658 - 24793219-24794109                                         26   3.7  
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912     26   3.7  
06_03_0904 + 25832026-25832643                                         25   6.4  
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473...    25   8.5  

>04_04_1224 +
           31858110-31858338,31859180-31859301,31859398-31859507,
           31859661-31859725,31859940-31860004,31860387-31860632,
           31861212-31861313,31861484-31861534,31862015-31862105,
           31862777-31862841
          Length = 381

 Score = 31.5 bits (68), Expect = 0.098
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 63  ETSIKSTRNR-DIEKSP*FK*-KTAPPSMTLKKELKRNPCHRQLS 191
           ET+I   R+  D++ SP     KTA PS T+ KE K NPC R  S
Sbjct: 165 ETNISIGRSSPDVKISPPATVAKTATPSKTIAKESKLNPCARVFS 209


>06_01_0394 -
           2835438-2835896,2836664-2836913,2837197-2837669,
           2838941-2840608
          Length = 949

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 241 HSVYKKEYK*VRFGGTFDSCLWHGFLFS 158
           H  Y   YK V F GT+DS + H ++ S
Sbjct: 530 HLPYNFHYKFVSFNGTYDSLMQHDYMKS 557


>04_04_0683 -
           27234137-27234486,27234645-27234756,27234889-27234961,
           27235071-27235491,27236148-27236403
          Length = 403

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 123 KTAPPSMTLK--KELKRNPCHRQLSNVP 200
           K  PP++ LK  K+LK+NP H  + N P
Sbjct: 16  KLKPPTLKLKEQKQLKKNPSHITMENGP 43


>12_02_1096 +
           26050224-26051058,26051599-26051831,26051940-26052230,
           26052860-26052988,26053082-26053255,26053334-26053547,
           26053881-26053968,26054195-26054239,26056969-26057015,
           26057441-26057727,26057812-26058051,26058141-26058257
          Length = 899

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 62  RNFDKEHKEQRHRKKSVIQMKD 127
           R+ DKEHK+ +HR K   + KD
Sbjct: 812 RDKDKEHKKHKHRHKDRSKDKD 833


>10_07_0100 + 12861588-12862601
          Length = 337

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 126 TAPPSMTLKKELKRNPCHRQLSNVPPKRT 212
           TAPPS +      R PCH +    PP  T
Sbjct: 199 TAPPSSS--SSYARRPCHAKTPRTPPTTT 225


>02_04_0658 - 24793219-24794109
          Length = 296

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 166 LFSSFFRVIDGGAVFHLNHGLFSMSLFLVLFIEVSGSYEWI 44
           LFS    ++  G  + L+H  F + L L++FI +   Y W+
Sbjct: 232 LFSFALMIMTLGVTYQLHHMFFILLLALLVFISIVCPY-WL 271


>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 132 PPSMTLKKELKRNPCHRQLSNVPPKRTYLY 221
           PP +T ++ + +N C   +S  P K   LY
Sbjct: 561 PPIITYRETVTKNSCRTVMSKSPNKHNRLY 590


>06_03_0904 + 25832026-25832643
          Length = 205

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 59  ARNFDKEHKEQRHRKKSVIQM--KDGAPVY 142
           AR  +KE KEQ+ + K  I+    DGA +Y
Sbjct: 25  ARKCEKEEKEQKLKVKKAIEKGNMDGARIY 54


>06_03_0576 -
           22443668-22444146,22446239-22446393,22447251-22447331,
           22448475-22448618,22449670-22449695,22449748-22449811,
           22449905-22449996,22450550-22450780,22451238-22451678,
           22451754-22452293
          Length = 750

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 71  DKEHKEQRHRKKSVIQMKDGAPVYDS 148
           D+E  ++RH   S ++M D  P+ DS
Sbjct: 408 DQEDPDERHHADSDVEMDDVKPLDDS 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,439,043
Number of Sequences: 37544
Number of extensions: 105014
Number of successful extensions: 266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)