Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I15
         (247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 169 FLFSSFFRVIDGGAVFHLNHGLFSMSLFLVLFIEVSG 59
           +L   F + +     F L HGL  + +FL  F E+SG
Sbjct: 774 YLGMVFLKTVILVCTFGLIHGLIVLPVFLSFFTEISG 810


>Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical
           protein B0391.12 protein.
          Length = 330

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 157 SFFRVIDGGAVFHLNHGLFSMSLFLVLFIEVS 62
           SFFR  D    FH N   F    F+++ I +S
Sbjct: 180 SFFRFPDENGGFHYNWNSFIALSFMLILINLS 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,526,118
Number of Sequences: 27780
Number of extensions: 91178
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)