Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I13
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   1.4  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   1.8  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    25   3.1  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   3.1  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   5.5  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   5.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   5.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   5.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    24   7.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   7.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    24   9.6  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    24   9.6  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    24   9.6  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    24   9.6  

>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 241 YRCLALLISIR-LC-RTH*HSRHTCLFCWYT 155
           Y  ++L  +IR +C RT  H    CLFCW++
Sbjct: 223 YGLISLWWAIRCICSRTKLHLVQVCLFCWFS 253


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 3   TPLSYKGRQRPHPPTCYDPDTLLSHFLPKSI 95
           TPLS       HP T   PD L S   P SI
Sbjct: 200 TPLSVSTSHLNHPSTSNSPDPLYSASQPPSI 230


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 55  ILTHFFRISYQRVYINKRQAFHRK*TNLKHALELYTNKTNKYGGCVN 195
           +L    R   + +Y+N   A   +  N++ ALEL +N T+     VN
Sbjct: 238 VLFSLLRSKKEPLYLNTLLALLVESNNIQEALELSSNSTHLQKSAVN 284


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 18  KGRQRPHPPTCYDPDTLLSHFLPKSIYK 101
           +G Q+  P   +DPDTL+S   PK   K
Sbjct: 170 EGPQKEGPLKDFDPDTLISLTAPKPCSK 197


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 309 RWTLFYFHEHLHTCSSVTGTFDLTF 383
           RWT F F E +  C+ +TG    TF
Sbjct: 115 RWTGFTFIEGILICTGLTGLCFATF 139


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 43  PLATILTHFFRISYQRVYINKRQAFHRK 126
           PL T+ T  F    +R   NK+  FHR+
Sbjct: 47  PLVTLKTTGFLDGLERAARNKKSGFHRE 74


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 318 LFYFHEHLHTC 350
           ++YFHEHL  C
Sbjct: 516 IYYFHEHLQPC 526


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +3

Query: 282 SFTFLTRQLRWTLFYFHEH-LHTCSSVTGTF 371
           SFT L   L W  + FH H +H   ++   F
Sbjct: 298 SFTDLDTLLNWPKYVFHHHKIHLADTIPLVF 328


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 297 TRQLRWTLFYFHEHLHTCSS 356
           T   +W L  +HE L +C+S
Sbjct: 45  TPSFKWVLNAYHERLRSCTS 64


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 78   NAKEVCQDR-SKWEDVVSAYPYRREA 4
            N KE   ++  +WED +SAY  R  A
Sbjct: 1294 NLKETWYEKLQRWEDALSAYEKREAA 1319


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 306 LRWTLFYFHEHL 341
           L WTL YFH+ L
Sbjct: 29  LEWTLSYFHDEL 40


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 108 SLVYIYSLVGNAKEVCQDRSKWEDVVSAYP 19
           ++ +I +L GN   V  D   W+  ++A P
Sbjct: 253 AIFFIINLAGNFGTVFVDNGYWQKAIAANP 282


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 301 LVKKVKLEHIYGTCTGNNGGYRCLALLISI 212
           L  KV    +YG     NG   CLA+  S+
Sbjct: 677 LALKVSANSVYGFTGATNGRLPCLAISSSV 706


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 155 SSSACFKFVHFLWNACLLFI 96
           S+ AC+ F+H L++  L ++
Sbjct: 422 SAGACYTFMHLLYHTTLTYL 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,657
Number of Sequences: 5004
Number of extensions: 35593
Number of successful extensions: 104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)