Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_I13
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603... 28 3.0
12_02_0422 - 18934190-18934344,18935687-18936227 27 3.9
08_01_0072 - 513561-513926,514055-514189,514274-514417,514505-51... 27 3.9
04_03_0904 + 20717005-20718087 27 3.9
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530... 27 5.2
11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683... 27 6.9
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 27 6.9
05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053 27 6.9
04_01_0213 - 2692253-2694562 27 6.9
02_02_0368 + 9501965-9501983,9502189-9502257,9502902-9503257,950... 27 6.9
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 27 6.9
07_01_0357 - 2628077-2628176,2628268-2628298,2628399-2628657 26 9.1
06_01_0635 + 4623223-4623380,4623529-4623724,4624379-4624894,462... 26 9.1
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 26 9.1
>03_06_0759 -
36059872-36059928,36059934-36060125,36060241-36060348,
36060440-36060712,36060923-36061009,36061085-36061276,
36061841-36061969,36062087-36062200,36062446-36062490,
36062785-36062956,36063229-36063515,36063989-36064456
Length = 707
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3
Query: 206 LSHALTQPPYLFVLLVYSSSACFKFVHFLWNACLLFIY 93
L H L+ P+LF++ + SSS F F+ L N LF+Y
Sbjct: 516 LGHFLSSIPFLFLVTI-SSSLVFYFLIGLRNEFNLFMY 552
>12_02_0422 - 18934190-18934344,18935687-18936227
Length = 231
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = -2
Query: 207 SVARIDTAAILVCFVGIQFECMFQICSFSMERLSLVYIYSLVGNAKEVCQDRSKWEDVVS 28
++++I+ AA C + + ++ C+F L +V + +++ QD KW+ V
Sbjct: 153 TISQIEFAARWACEKRAKGKPVYVHCAFEGVFLFVVDMDPNAEEDEQLVQDNHKWQ-FVR 211
Query: 27 AYPYRRE 7
YP RRE
Sbjct: 212 DYPRRRE 218
>08_01_0072 -
513561-513926,514055-514189,514274-514417,514505-514744,
516325-516636
Length = 398
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 122 ENEQI*NMHSNCIPTKQTSMAAVSMR 199
+ +QI ++ N P+K T +AAVSMR
Sbjct: 262 DKQQIKGLYFNTSPSKDTVLAAVSMR 287
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 3 TPLSYKGRQRPHPPTCYDP 59
TP SYK + +P+PP Y P
Sbjct: 214 TPPSYKPQPKPNPPPTYKP 232
>04_04_1299 +
32450998-32451134,32451575-32452304,32452856-32453053,
32453398-32454065,32454555-32454978,32455917-32456009,
32456101-32456295,32456378-32456470,32456718-32456930,
32457015-32457104,32457239-32457400
Length = 1000
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 133 NLKHALELYTNKTNKYGGCVNACD-RVE*ILIKQDSDNRHYFQYTFHIY 276
N+K A + T+KY ++ACD V I +KQ++ H F IY
Sbjct: 264 NVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVICFSIY 312
>11_04_0351 +
16666398-16666532,16666911-16667048,16667398-16668306,
16668383-16668511,16668774-16668996,16669085-16669231,
16669332-16669573,16669660-16669689,16669784-16669865,
16669968-16670128,16670775-16670898,16671206-16671414
Length = 842
Score = 26.6 bits (56), Expect = 6.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 98 IYTLW*EMRKKCVRIVASGRMW 33
++T W + +KC R++ G+MW
Sbjct: 792 LFTSWTQWMEKCRRVLNRGQMW 813
>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -3
Query: 218 IYSTLSHALTQP----PYLFVLLVYSSSACFKFVHFLWNACLLF 99
+YS + +A+ Q PY+FV Y + + + F W A F
Sbjct: 954 MYSAMPYAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFF 997
>05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053
Length = 576
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 215 YSTLSHALTQPPYLFVLLVYSSSACFKFVHFLWNACLLFIYTLW 84
+S LS + PP LF+ ++ F V FLW L FI +LW
Sbjct: 54 FSLLSACVLVPPVLFLAVL-----AF-LVLFLWFTLLYFIRSLW 91
>04_01_0213 - 2692253-2694562
Length = 769
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 54 DPDTLLSHFLPKSIYKQETGVP*KMNKFETCTRTVYQQNKQVWR 185
DP S P + Y++ G+ + N F+ CTR + + K +W+
Sbjct: 370 DPSRFFSKDHPTTSYRRWLGIIGQYNLFDECTRDITWKLK-MWK 412
>02_02_0368 +
9501965-9501983,9502189-9502257,9502902-9503257,
9503354-9503514,9503872-9504032,9504094-9504275
Length = 315
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 266 NVYWK*WRLSLSCFINIYSTLSHALTQPPYLFVLLVYSS 150
N Y WRL+ C +N+ + L Q +LF ++V ++
Sbjct: 258 NDYSGVWRLTSFCLLNVENEAESLLKQAVHLFSMVVVNA 296
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 212 STLSHALTQPPYLFVLLVYSSSACFKFVHFLWNAC 108
ST + T PP + L S+S C + VHF N+C
Sbjct: 57 STTTATATLPPIITPTLSPSTSTCLECVHF--NSC 89
>07_01_0357 - 2628077-2628176,2628268-2628298,2628399-2628657
Length = 129
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +3
Query: 48 CYDPDTLLSH-FLPKSIYKQETG 113
CY PDTLLSH +I+ Q+ G
Sbjct: 45 CYQPDTLLSHASYAFNIFYQQNG 67
>06_01_0635 +
4623223-4623380,4623529-4623724,4624379-4624894,
4626212-4626276,4626387-4626453
Length = 333
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 95 YTLW*EMRKKCVRIVASG 42
Y LW E+RK+C +V+ G
Sbjct: 110 YKLWDELRKECEELVSKG 127
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 163 WYTVRVHVSNLFIFYGTPVSCLYILFG 83
W +VR+ FIF+G P I FG
Sbjct: 295 WRSVRLSAVTTFIFWGAPAFISSITFG 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,874,024
Number of Sequences: 37544
Number of extensions: 218609
Number of successful extensions: 502
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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