Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I13
         (388 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF293639-1|AAG33381.1|  715|Homo sapiens dioxin receptor repress...    29   5.2  
AB033060-1|BAA86548.1|  727|Homo sapiens KIAA1234 protein protein.     29   5.2  
AB209615-1|BAD92852.1|  260|Homo sapiens protein phosphatase 5, ...    29   6.9  

>AF293639-1|AAG33381.1|  715|Homo sapiens dioxin receptor repressor
           protein.
          Length = 715

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 6   PLSYKGRQRPHPPTCYDPDTLLSHFLPK 89
           P+   G  + HPP C+ P   L H LP+
Sbjct: 485 PMRDVGEDQVHPPLCHFPQRSLQHQLPQ 512


>AB033060-1|BAA86548.1|  727|Homo sapiens KIAA1234 protein protein.
          Length = 727

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 6   PLSYKGRQRPHPPTCYDPDTLLSHFLPK 89
           P+   G  + HPP C+ P   L H LP+
Sbjct: 497 PMRDVGEDQVHPPLCHFPQRSLQHQLPQ 524


>AB209615-1|BAD92852.1|  260|Homo sapiens protein phosphatase 5,
           catalytic subunit variant protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 267 PYICSSFTFLTRQL--RWTLFYFHEHLHTCSSVTGTF 371
           P++C   T L+R L  RW LF+  E +  C    G F
Sbjct: 34  PHLCPLPTSLSRPLPLRWPLFFQTEKITVCGDTHGQF 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,300,370
Number of Sequences: 237096
Number of extensions: 1289714
Number of successful extensions: 2907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2907
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)