Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_I13
(388 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27079-3|CAA81590.1| 332|Caenorhabditis elegans Hypothetical pr... 29 0.86
X68384-1|CAA48455.1| 332|Caenorhabditis elegans protein ( C.ele... 29 0.86
S75262-1|AAC60520.1| 332|Caenorhabditis elegans p34cdc2 kinase ... 29 0.86
AF129109-1|AAD37119.1| 332|Caenorhabditis elegans CDK1 ortholog... 29 0.86
AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical ... 29 1.1
AC024211-8|AAF36062.1| 832|Caenorhabditis elegans Hypothetical ... 29 1.1
U58754-8|AAK72082.1| 325|Caenorhabditis elegans Serpentine rece... 29 1.5
U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical p... 28 2.0
Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical pr... 27 3.5
AF088289-1|AAC98296.1| 263|Caenorhabditis elegans caspase-relat... 27 4.6
AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-relat... 27 4.6
AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase prote... 27 4.6
AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical ... 27 6.1
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ... 26 8.1
AF003385-1|AAB54243.1| 884|Caenorhabditis elegans Hypothetical ... 26 8.1
>Z27079-3|CAA81590.1| 332|Caenorhabditis elegans Hypothetical
protein T05G5.3 protein.
Length = 332
Score = 29.5 bits (63), Expect = 0.86
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 19 RVGRDHILPLATILTHFFRISYQRVYINKRQAFHR 123
++G+D LPL T+ ++ F+I + ++R+ HR
Sbjct: 111 QLGKDEYLPLETLKSYTFQILQAMCFCHQRRVIHR 145
>X68384-1|CAA48455.1| 332|Caenorhabditis elegans protein (
C.elegans mRNA for p34cdc2 homologue. ).
Length = 332
Score = 29.5 bits (63), Expect = 0.86
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 19 RVGRDHILPLATILTHFFRISYQRVYINKRQAFHR 123
++G+D LPL T+ ++ F+I + ++R+ HR
Sbjct: 111 QLGKDEYLPLETLKSYTFQILQAMCFCHQRRVIHR 145
>S75262-1|AAC60520.1| 332|Caenorhabditis elegans p34cdc2 kinase
protein.
Length = 332
Score = 29.5 bits (63), Expect = 0.86
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 19 RVGRDHILPLATILTHFFRISYQRVYINKRQAFHR 123
++G+D LPL T+ ++ F+I + ++R+ HR
Sbjct: 111 QLGKDEYLPLETLKSYTFQILQAMCFCHQRRVIHR 145
>AF129109-1|AAD37119.1| 332|Caenorhabditis elegans CDK1 ortholog
protein.
Length = 332
Score = 29.5 bits (63), Expect = 0.86
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 19 RVGRDHILPLATILTHFFRISYQRVYINKRQAFHR 123
++G+D LPL T+ ++ F+I + ++R+ HR
Sbjct: 111 QLGKDEYLPLETLKSYTFQILQAMCFCHQRRVIHR 145
>AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical
protein Y39A1A.6 protein.
Length = 260
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 84 PKSIYKQETGVP*KMNKFETCTRTVYQQNKQVWRLCQCVRQSRID 218
P + ETG+P F C +V+ K++W CQ V + +D
Sbjct: 102 PPNYIVPETGLPKPKEVFH-CKESVHFSPKRMWAACQLVWKMNVD 145
>AC024211-8|AAF36062.1| 832|Caenorhabditis elegans Hypothetical
protein Y76B12C.1 protein.
Length = 832
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = -3
Query: 206 LSHALTQPPYLFVLLVYSSSACFKFVHFLWNACLLFIYTLW 84
L+ T P+ F+ +++ +S+C H WNAC+ F+++L+
Sbjct: 351 LTQRRTDFPH-FMKILFLTSSCAILFH--WNACVYFLFSLY 388
>U58754-8|AAK72082.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 13 protein.
Length = 325
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 248 WRLSLSCFINIYSTLSHALTQPPYLFVLLVYSSSACFKFVHFLW 117
W L LS Y A T+P + ++ + + + +FV FLW
Sbjct: 105 WSLLLSFSYRCYILYKPAPTRPVLVLIIFLIYTPSLLQFVSFLW 148
>U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical
protein F20D6.12 protein.
Length = 513
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 227 FINIYSTLSHALTQPPYLFVLLVYSSSACFKFVHFLWNACLLFIYTLW 84
+I + +SH +LF+ + S F FV L C LF YT W
Sbjct: 34 YIIVLKVVSHLKENNSFLFIFTILGISDIFYFVVTL--LCELFHYTNW 79
>Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical
protein D1046.4 protein.
Length = 583
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 276 CSSFTFLTRQLRWTLFYFHEHLHTCSSVTG 365
C TFLT L W++F+ ++ TC + G
Sbjct: 138 CLISTFLTAFLPWSIFFGFPYVATCQFLLG 167
>AF088289-1|AAC98296.1| 263|Caenorhabditis elegans caspase-related
protein 2B protein.
Length = 263
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 63 TLLSHFLPKSIYKQETGVP*KMNKFETCTRTVYQQNKQVWRLCQCVRQSRID 218
T++SH +Y + GVP +M T K W +C C R RID
Sbjct: 93 TIMSHGDQGLLYGVD-GVPVQMLDIIDLMCTASLAKKPKWLMCVCCRGDRID 143
>AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-related
protein 2A protein.
Length = 826
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 63 TLLSHFLPKSIYKQETGVP*KMNKFETCTRTVYQQNKQVWRLCQCVRQSRID 218
T++SH +Y + GVP +M T K W +C C R RID
Sbjct: 656 TIMSHGDQGLLYGVD-GVPVQMLDIIDLMCTASLAKKPKWLMCVCCRGDRID 706
>AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase protein
2 protein.
Length = 826
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 63 TLLSHFLPKSIYKQETGVP*KMNKFETCTRTVYQQNKQVWRLCQCVRQSRID 218
T++SH +Y + GVP +M T K W +C C R RID
Sbjct: 656 TIMSHGDQGLLYGVD-GVPVQMLDIIDLMCTASLAKKPKWLMCVCCRGDRID 706
>AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical
protein C23H5.7 protein.
Length = 644
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 182 PYLFVLLVYSSSACFKFVHFLWNACLLFIYTLW 84
P F +++ + S C H WNACL F+++L+
Sbjct: 170 PRAFKIILLAVS-CIVLFH--WNACLYFLFSLY 199
>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
protein 1, isoform a protein.
Length = 1147
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 274 IYGTCTGNNGGYRCLALLISIRL 206
I+GT N G Y+CLA + IRL
Sbjct: 91 IHGTRPQNEGEYQCLAEISRIRL 113
>AF003385-1|AAB54243.1| 884|Caenorhabditis elegans Hypothetical
protein R08F11.1 protein.
Length = 884
Score = 26.2 bits (55), Expect = 8.1
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 7 LSPIRVG--RDHILPLATILTHFFRISYQRVYINKRQAFHRK*TNLK 141
LSP+ G D LPLA H F SY+ V ++ +F N K
Sbjct: 217 LSPVIPGDYSDSSLPLANFEFHVFNDSYEEVEVSITMSFRNGTGNRK 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,578,136
Number of Sequences: 27780
Number of extensions: 205913
Number of successful extensions: 594
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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