Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I13
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 25  GRDHILPLATILTHFFRISYQRVYINKRQAFHR 123
           G+ H+LP   +L H    S Q ++  + +  HR
Sbjct: 183 GKFHLLPTGELLVHSLEFSDQ-IHGYRCRTMHR 214


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 25  GRDHILPLATILTHFFRISYQRVYINKRQAFHR 123
           G+ H+LP   +L H    S Q ++  + +  HR
Sbjct: 183 GKFHLLPTGELLVHSLEFSDQ-IHGYRCRTMHR 214


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 220 LIKQDSDNRHYFQYTFHIYVQAS 288
           LIKQ++  RH+     H ++Q++
Sbjct: 132 LIKQETLQRHHHLQNHHHHLQST 154


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 107 DRRSIENEQI*NMHSN 154
           ++R+IENEQ+  M+ +
Sbjct: 441 EKRTIENEQLNRMYKS 456


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 147 CMFQICSFSMERLSLVYIY 91
           C F I S S E+ ++ Y++
Sbjct: 200 CSFAIESISYEQTAITYVW 218


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 147 CMFQICSFSMERLSLVYIY 91
           C F I S S E+ ++ Y++
Sbjct: 200 CSFAIESISYEQTAITYVW 218


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 147 CMFQICSFSMERLSLVYIY 91
           C F I S S E+ ++ Y++
Sbjct: 251 CSFAIESISYEQTAITYVW 269


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 147 CMFQICSFSMERLSLVYIY 91
           C F I S S E+ ++ Y++
Sbjct: 200 CSFAIESISYEQTAITYVW 218


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 186  AAILVCFVGIQFECMFQICSFSMERLSLVYIYSLVGNA 73
            AAILV  V +   C+ +      ++  +VY  + VG A
Sbjct: 1593 AAILVIIVAVIVICVLRGKGHGSDKDDVVYQQTGVGGA 1630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,942
Number of Sequences: 438
Number of extensions: 2703
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)