Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_I12
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 173 7e-45
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 173 7e-45
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 173 7e-45
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 69 4e-13
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 28 0.54
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 0.94
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 2.2
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.2
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 3.8
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 6.7
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 6.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 24 8.8
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 24 8.8
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 8.8
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 173 bits (422), Expect = 7e-45
Identities = 77/105 (73%), Positives = 90/105 (85%)
Frame = +3
Query: 9 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 188
A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSG
Sbjct: 336 ASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSG 395
Query: 189 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGANKGCE 323
DA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVG K E
Sbjct: 396 DACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 173 bits (422), Expect = 7e-45
Identities = 77/105 (73%), Positives = 90/105 (85%)
Frame = +3
Query: 9 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 188
A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSG
Sbjct: 336 ASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSG 395
Query: 189 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGANKGCE 323
DA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVG K E
Sbjct: 396 DACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 173 bits (422), Expect = 7e-45
Identities = 77/105 (73%), Positives = 90/105 (85%)
Frame = +3
Query: 9 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 188
A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSG
Sbjct: 336 ASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSG 395
Query: 189 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGANKGCE 323
DA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVG K E
Sbjct: 396 DACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 68.5 bits (160), Expect = 4e-13
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = +3
Query: 15 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 194
F AQ+ +L P ++ GY+ V+ HTA FA++ K+D+ T + ++ P G
Sbjct: 560 FIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMK 618
Query: 195 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG 305
I L P+C+E F+++ +GRF +RD TVAVG
Sbjct: 619 IIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVG 655
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 28.3 bits (60), Expect = 0.54
Identities = 30/100 (30%), Positives = 42/100 (42%)
Frame = +3
Query: 15 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 194
F A++ + G I +G T VL H+ + K+ K + + S K
Sbjct: 498 FVAEIQTFDIHGPILSGSTLVL-----HLGRTVTSVSLKIVTVNNKRSR-HIASRKRALV 551
Query: 195 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGANK 314
I L PLC+ +E P LGRF +R TVA G K
Sbjct: 552 RISFLDGLFPLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 0.94
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 199 MAASPDLMDLGLSSVDLPVRRSTFS 125
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 220 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 59
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 184 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 65
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 143 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 42
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 47 RSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 139
+S + I CIG+ SPH +C R Q +P
Sbjct: 106 KSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 124 LISANLQAMWAVWQSNTGV 68
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.2 bits (50), Expect = 8.8
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 72 PVLDCHTAHIACKFAEIKEKVDRRTGKST--EDNPKSIKSGDAAIVNLVPSKPLCVESFQ 245
PV+D + A KF + +K R P I SG A L+PS+
Sbjct: 1474 PVIDLYGKFAAEKFTALMKKYPGRIYSRPLFTQLPSYIFSG--ADFALIPSRD------- 1524
Query: 246 EFPPLGRFAVRDMRQ-TVAVGANKGCELQGSRWWQSHQSCRISH 374
P G AV R+ T+ +GA G Q WW + +S +H
Sbjct: 1525 --EPFGLVAVEFGRKGTLGIGAKVGGLGQMPGWWYTIESNTTAH 1566
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.2 bits (50), Expect = 8.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 255 PLGRFAVRDMRQ-TVAVGANKGCELQGSRWWQSHQSCRISHQGQE 386
P G AV R+ + +GA G Q WW S +S SH Q+
Sbjct: 1523 PFGLVAVEFGRKGALGIGARVGGLGQMPGWWYSVESNATSHVLQQ 1567
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 36 LNHPGQISNGYTPVLDCHTAHIACK 110
L HP Q+SN +T C A AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,294
Number of Sequences: 5004
Number of extensions: 34163
Number of successful extensions: 90
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -