Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_I12
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 162 1e-40
03_01_0547 + 4093196-4093657,4094267-4095148 162 1e-40
03_01_0544 + 4082528-4082989,4083585-4084466 162 1e-40
03_01_0543 + 4076981-4077442,4078145-4079026 162 1e-40
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 48 2e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 48 3e-06
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 48 3e-06
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 47 6e-06
10_08_0590 + 19037115-19037485,19037814-19037916,19038199-190382... 32 0.18
01_01_1201 + 9678893-9679311,9679415-9679721 32 0.23
10_08_1038 - 22485394-22485960,22486712-22487197 29 1.6
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 28 2.9
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 28 3.8
04_03_0955 + 21215380-21215991,21216058-21216639 28 3.8
11_06_0596 + 25385744-25388890 27 5.0
11_04_0242 - 15273774-15274043,15274131-15274235 27 5.0
03_05_0896 - 28592658-28593331,28594069-28595455 27 5.0
11_03_0079 + 9669666-9669728,9670779-9672545 27 6.6
03_05_0010 + 19622430-19622512,19622539-19623082,19623361-196237... 27 6.6
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 27 8.7
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636... 27 8.7
08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420 27 8.7
03_03_0035 + 13977150-13979228,13979351-13979824 27 8.7
02_05_0254 - 27177167-27177393,27177476-27177725,27177818-271780... 27 8.7
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 162 bits (393), Expect = 1e-40
Identities = 70/105 (66%), Positives = 86/105 (81%)
Frame = +3
Query: 9 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 188
A FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+G
Sbjct: 326 ASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNG 385
Query: 189 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGANKGCE 323
DA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVG K E
Sbjct: 386 DAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVE 430
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 162 bits (393), Expect = 1e-40
Identities = 70/105 (66%), Positives = 86/105 (81%)
Frame = +3
Query: 9 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 188
A FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+G
Sbjct: 326 ASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNG 385
Query: 189 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGANKGCE 323
DA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVG K E
Sbjct: 386 DAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVE 430
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 162 bits (393), Expect = 1e-40
Identities = 70/105 (66%), Positives = 86/105 (81%)
Frame = +3
Query: 9 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 188
A FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+G
Sbjct: 326 ASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNG 385
Query: 189 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGANKGCE 323
DA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVG K E
Sbjct: 386 DAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVE 430
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 162 bits (393), Expect = 1e-40
Identities = 70/105 (66%), Positives = 86/105 (81%)
Frame = +3
Query: 9 ADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 188
A FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+G
Sbjct: 326 ASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNG 385
Query: 189 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGANKGCE 323
DA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVG K E
Sbjct: 386 DAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVE 430
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Frame = +3
Query: 24 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKS-------IK 182
Q++ L + GY VL H+ C+ ++ E++D + K + K +K
Sbjct: 324 QILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVK 383
Query: 183 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 278
+G + + + +C+E+F +FP LGRF +R
Sbjct: 384 NGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 48.0 bits (109), Expect = 3e-06
Identities = 29/94 (30%), Positives = 47/94 (50%)
Frame = +3
Query: 24 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIV 203
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 204 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG 305
+ P+CV+ F + LGR +R T+AVG
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVG 669
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 48.0 bits (109), Expect = 3e-06
Identities = 29/94 (30%), Positives = 47/94 (50%)
Frame = +3
Query: 24 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIV 203
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 204 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG 305
+ P+CV+ F + LGR +R T+AVG
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVG 669
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +3
Query: 99 IACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 278
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 279 DMRQTVAVG 305
T+AVG
Sbjct: 637 SQGNTIAVG 645
>10_08_0590 +
19037115-19037485,19037814-19037916,19038199-19038208,
19038305-19038435,19038881-19038901
Length = 211
Score = 32.3 bits (70), Expect = 0.18
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 225 LCVESFQEFP--PLGRFAVRDMRQTVAVGANKGCELQGSRWWQSHQS 359
LC S Q FP PL + AVR +R+ V +N+GC + R Q H S
Sbjct: 74 LCRVSGQLFPLSPLEQQAVRGIRRKHEVDSNEGCSFKRRRGAQLHPS 120
>01_01_1201 + 9678893-9679311,9679415-9679721
Length = 241
Score = 31.9 bits (69), Expect = 0.23
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +3
Query: 87 HTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 266
H + + AE E+ RR+ E P S + G +A N+ S E+F++ +
Sbjct: 112 HGEDVRRRAAEKAEEARRRS----EPQPSSEEKGRSATENIYGSAASAAEAFRQKMTMPE 167
Query: 267 FAVRDMRQTVAVGANKG 317
V R A G NKG
Sbjct: 168 DVVEQKRAEAAAGGNKG 184
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 2 HEGRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSL 106
H+ S+ A P NI RIH IGL SP L
Sbjct: 92 HDASSSSSCAAAAPPSPNILRIHAPIGLARSPAHL 126
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 193 ASPDLMDLGLSSVDLPVRRSTFSL 122
A+ DLM G+S V+LPVRR+ F++
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAV 603
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 115 PKSKRKSTVVLVNQQRTTLNPLNLVMP 195
P+ R+S + Q TT++P NLV+P
Sbjct: 103 PRRNRRSPALRAAFQETTISPANLVLP 129
>04_03_0955 + 21215380-21215991,21216058-21216639
Length = 397
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 192 AAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGANKGC 320
AA ++ + SKP V +++EF PL + + Q V +G+ K C
Sbjct: 252 AADLSNLDSKPQLVGTWKEFDPLEDWDLLQGPQLVNIGSGKFC 294
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 118 KSKRKSTVVLVNQQRTTLNPLNLVMPPLSTW 210
K+ K +N+ TTL L++ M P+S+W
Sbjct: 832 KANLKDLFAQINKLHTTLRSLSIRMKPVSSW 862
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 114 QICRLCGLCGNPIQVCI 64
QIC +C CG P VCI
Sbjct: 74 QICAVCTCCGGPHGVCI 90
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 96 HIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 257
H+ + EIK+ +R G+ + ++++GD SKP E F P
Sbjct: 638 HVVLRIEEIKKSSERLEGRDPQQQASNLEAGDDQ-----TSKPESAEGLNPFAP 686
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 15 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 137
FTA+ +H Q++N VLDC AH+ CK+ + E ++
Sbjct: 572 FTAENRSKSH--QVNN-VLAVLDCLQAHMECKYDMLTESLE 609
>03_05_0010 +
19622430-19622512,19622539-19623082,19623361-19623767,
19623831-19624167,19624290-19624508,19625522-19625826,
19626128-19626287,19626422-19626547
Length = 726
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 120 IKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 218
IKE + R GKST D P +G I PS
Sbjct: 207 IKEAITTRGGKSTRDPPYPNPTGTNGIAREAPS 239
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 218 GGNQVDNGGITRFNGF 171
GGN +DN G+T +N F
Sbjct: 379 GGNSMDNSGVTEYNLF 394
>09_04_0281 -
16360082-16361059,16361608-16361688,16363287-16363650,
16363675-16364348
Length = 698
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +3
Query: 312 KGCELQGSRWWQSHQSCRISHQGQEVASTV 401
+GC Q W H+ CR+ H ++ V
Sbjct: 426 EGCPSQQDDWHLQHEGCRLQHDDWQLKHCV 455
>08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420
Length = 647
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 15 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 137
FTA+ +H Q++N +LDC AH+ CK+ + E ++
Sbjct: 610 FTAENRSKSH--QVNN-VLAILDCLQAHMECKYDMLTESLE 647
>03_03_0035 + 13977150-13979228,13979351-13979824
Length = 850
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 297 RPSASCHARRNDRGVGTPGRTP 232
RP + +RRNDRG G GR P
Sbjct: 56 RPEETPVSRRNDRGGGGGGREP 77
>02_05_0254 -
27177167-27177393,27177476-27177725,27177818-27178054,
27178138-27178296,27179454-27179527,27180929-27181172
Length = 396
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 250 NSWKDSTHRGLEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQA 101
N + RGL+GT A S L G S + + + F+ + N+ A
Sbjct: 133 NKTSNPLFRGLQGTNFASAGSGILDSTGQSIIPMSKQVQQFAAVQRNISA 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,094
Number of Sequences: 37544
Number of extensions: 282089
Number of successful extensions: 914
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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