Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I11
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   138   1e-34
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   138   1e-34
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   2.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.8  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    24   5.1  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    24   5.1  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      23   8.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   8.8  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    23   8.8  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  138 bits (335), Expect = 1e-34
 Identities = 67/79 (84%), Positives = 75/79 (94%)
 Frame = -2

Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
           TRIG AGTVRRQAVDVSPLRRVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSS
Sbjct: 125 TRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSS 184

Query: 146 NSYAIKKKDELERVAKSNR 90
           NSYAIKKKDELERVAKSNR
Sbjct: 185 NSYAIKKKDELERVAKSNR 203


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  138 bits (335), Expect = 1e-34
 Identities = 67/79 (84%), Positives = 75/79 (94%)
 Frame = -2

Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
           TRIG AGTVRRQAVDVSPLRRVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSS
Sbjct: 125 TRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSS 184

Query: 146 NSYAIKKKDELERVAKSNR 90
           NSYAIKKKDELERVAKSNR
Sbjct: 185 NSYAIKKKDELERVAKSNR 203


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 176 ELINAAKGSSNSYAIKKKDELER 108
           E +N+   + NS  ++KKDELE+
Sbjct: 133 EKLNSEISNQNSLILQKKDELEK 155


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 277  PHYVVLTRLSGYCAQEH 227
            PH+ V+TR+  YC   H
Sbjct: 1435 PHWQVITRIPQYCHDTH 1451


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 227 REAAFRNIKTIAECVADELINAAKGSSNS 141
           R+ A+RN KT+A+  A   +N    + N+
Sbjct: 261 RDVAYRNAKTVAKWQAYGFMNGVLNTDNT 289


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 151 EPLAALISSSATHSAIVLMFLNAASRAPVHNNQIAWLTRRNGD 279
           +PL AL SSS   S   +  L AA       N   WL +   D
Sbjct: 371 QPLDALKSSSTQTSIPKIQKLKAAKLPSEEENTTKWLNKAIND 413


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 193 PNASLMNLSMLPRAHLTHTPSR 128
           PNA L+N SML    L  TP R
Sbjct: 110 PNALLLNGSMLHERPLKVTPKR 131


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 115  SSSFFLMAYELDEPLAALISSSATHSAI 198
            SS+F   +YEL E L  + SSS   S I
Sbjct: 1893 SSAFIFPSYELAEGLTMMESSSFMDSII 1920


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 292 KPSMCPHYVVLTRLSGYCAQEHVRL 218
           K +   H+ VLTRL GY  +  V++
Sbjct: 140 KKNCLSHHEVLTRLDGYDPERGVKV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,128,371
Number of Sequences: 5004
Number of extensions: 18937
Number of successful extensions: 45
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)