Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_I11
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 144 1e-35
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 144 1e-35
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 31 0.16
05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022 27 4.6
10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056 26 6.1
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 26 6.1
08_02_0226 - 14480461-14481199,14481399-14482243 26 6.1
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 26 6.1
09_06_0193 - 21460365-21460679,21460781-21460931,21461030-214612... 26 8.0
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 26 8.0
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 144 bits (350), Expect = 1e-35
Identities = 70/79 (88%), Positives = 76/79 (96%)
Frame = -2
Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSS
Sbjct: 121 TRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSS 180
Query: 146 NSYAIKKKDELERVAKSNR 90
NSYAIKKKDE+ERVAK+NR
Sbjct: 181 NSYAIKKKDEIERVAKANR 199
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 144 bits (350), Expect = 1e-35
Identities = 70/79 (88%), Positives = 76/79 (96%)
Frame = -2
Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSS
Sbjct: 122 TRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSS 181
Query: 146 NSYAIKKKDELERVAKSNR 90
NSYAIKKKDE+ERVAK+NR
Sbjct: 182 NSYAIKKKDEIERVAKANR 200
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -2
Query: 299 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 141
RR+AV + +RR+ A WL GAR A R A E++ +A G S
Sbjct: 9 RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58
>05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022
Length = 496
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 103 ATRSSSSFFLMAYELDEPLAALISSSATHSAIVLMFLNAASRAPVHNNQIAWLTR 267
A R SSF L++ + LAA++S A A V N A H++ +A L R
Sbjct: 322 AARRMSSFTLVSSQTQRTLAAVLSDEAFVDAYVA--ANRARLRERHDHVVAGLAR 374
>10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056
Length = 324
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -3
Query: 325 PGSVVLVQFDVKPSMCPHYVVLTRLSGYCAQEHVRLHLETSKQ*PNAS-LMNLSMLPRAH 149
P V+ +FD + + P +VL + G +H + ++S L+NL+ML +
Sbjct: 201 PDPTVVDRFDHRSAAVPPLMVLMQGGGDQMISGSGVHCSNNDNSGSSSALLNLTMLQYSF 260
Query: 148 LTHTPSRKRMS 116
L H P+ M+
Sbjct: 261 LEHRPTGDDMA 271
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 166 LISSSATHS-AIVLMFLNAASRAPVHNNQIAWLTRRNGD 279
LISS TH A L R NQ+ W RR+GD
Sbjct: 1167 LISSKLTHMCAGARTLLCGGPRIASTGNQVHWTHRRHGD 1205
>08_02_0226 - 14480461-14481199,14481399-14482243
Length = 527
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 115 SSSFFLMAYELDEPLAALISSSATHSAIVLMFLNAASRAPVHNNQIAWLTRRNGDTS 285
S +F +Y+ D S A H VL+ + S A VHN++ ++ R + S
Sbjct: 100 SRMWFRFSYDADSETRCNCSVIAAHGDSVLINIFYFSNASVHNHEDRFVYRASAAAS 156
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 151 EPLAALISSSATHSAIVLMFLNAASRAPVHNNQIAWLTRRNGDTSTA 291
+ LAA + S+A+ S+ L +AA +++ LT GDT++A
Sbjct: 49 QALAATLPSTASSSSPALFAKDAAGGGDAEPDRVFALTLCRGDTASA 95
>09_06_0193 -
21460365-21460679,21460781-21460931,21461030-21461267,
21461364-21461571,21461776-21461975,21462085-21462186,
21462617-21463967
Length = 854
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 189 FGYCFDVSKCSLTCSC 236
FGYC DV+ + TC C
Sbjct: 319 FGYCGDVTATASTCYC 334
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 269 RRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 141
+R + + L GAR+ R IA C+A+E A + S
Sbjct: 647 QRYERLVATLSAGARDKVLRGGAEIARCLAEEYTTAEEDDEAS 689
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,365,093
Number of Sequences: 37544
Number of extensions: 125319
Number of successful extensions: 348
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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