Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I11
         (327 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14970-1|AAA85658.1|  204|Homo sapiens ribosomal protein S5 prot...   160   8e-40
BC018151-1|AAH18151.1|  204|Homo sapiens ribosomal protein S5 pr...   160   8e-40
BC015405-1|AAH15405.1|  204|Homo sapiens ribosomal protein S5 pr...   160   8e-40
AB061853-1|BAB79493.1|  204|Homo sapiens ribosomal protein S5 pr...   160   8e-40
AK223106-1|BAD96826.1|  204|Homo sapiens ribosomal protein S5 va...   157   1e-38
AB007149-1|BAA25815.1|   55|Homo sapiens ribosomal protein S5 pr...   113   1e-25
AJ224874-1|CAA12175.1| 1966|Homo sapiens L-type calcium channel ...    28   7.7  
AJ006216-1|CAA06916.1| 1966|Homo sapiens L-type calcium channel ...    28   7.7  
AF201304-1|AAF15290.1| 1977|Homo sapiens voltage-gated L-type ca...    28   7.7  
AF067227-1|AAD03587.1| 1912|Homo sapiens voltage-gated L-type ca...    28   7.7  

>U14970-1|AAA85658.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  160 bits (389), Expect = 8e-40
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = -2

Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
           TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS
Sbjct: 126 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSS 185

Query: 146 NSYAIKKKDELERVAKSNR 90
           NSYAIKKKDELERVAKSNR
Sbjct: 186 NSYAIKKKDELERVAKSNR 204


>BC018151-1|AAH18151.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  160 bits (389), Expect = 8e-40
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = -2

Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
           TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS
Sbjct: 126 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSS 185

Query: 146 NSYAIKKKDELERVAKSNR 90
           NSYAIKKKDELERVAKSNR
Sbjct: 186 NSYAIKKKDELERVAKSNR 204


>BC015405-1|AAH15405.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  160 bits (389), Expect = 8e-40
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = -2

Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
           TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS
Sbjct: 126 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSS 185

Query: 146 NSYAIKKKDELERVAKSNR 90
           NSYAIKKKDELERVAKSNR
Sbjct: 186 NSYAIKKKDELERVAKSNR 204


>AB061853-1|BAB79493.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  160 bits (389), Expect = 8e-40
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = -2

Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
           TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS
Sbjct: 126 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSS 185

Query: 146 NSYAIKKKDELERVAKSNR 90
           NSYAIKKKDELERVAKSNR
Sbjct: 186 NSYAIKKKDELERVAKSNR 204


>AK223106-1|BAD96826.1|  204|Homo sapiens ribosomal protein S5
           variant protein.
          Length = 204

 Score =  157 bits (380), Expect = 1e-38
 Identities = 76/79 (96%), Positives = 78/79 (98%)
 Frame = -2

Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
           TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS
Sbjct: 126 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSS 185

Query: 146 NSYAIKKKDELERVAKSNR 90
           N YAIKK+DELERVAKSNR
Sbjct: 186 NFYAIKKRDELERVAKSNR 204


>AB007149-1|BAA25815.1|   55|Homo sapiens ribosomal protein S5
           protein.
          Length = 55

 Score =  113 bits (272), Expect = 1e-25
 Identities = 54/55 (98%), Positives = 55/55 (100%)
 Frame = -2

Query: 254 AIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 90
           AIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 1   AIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 55


>AJ224874-1|CAA12175.1| 1966|Homo sapiens L-type calcium channel
           alpha-1 subunit protein.
          Length = 1966

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 169 ISSSATHSAIVLM-FLNAASRAPVHNNQIAWLTR 267
           + S+A + A++L+ FLN  + A  H+ Q  WLT+
Sbjct: 515 VKSNACYWAVLLLVFLNTLTIASEHHGQPVWLTQ 548


>AJ006216-1|CAA06916.1| 1966|Homo sapiens L-type calcium channel
           alpha-1 subunit protein.
          Length = 1966

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 169 ISSSATHSAIVLM-FLNAASRAPVHNNQIAWLTR 267
           + S+A + A++L+ FLN  + A  H+ Q  WLT+
Sbjct: 515 VKSNACYWAVLLLVFLNTLTIASEHHGQPVWLTQ 548


>AF201304-1|AAF15290.1| 1977|Homo sapiens voltage-gated L-type
           calcium channel alpha-1 subunit protein.
          Length = 1977

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 169 ISSSATHSAIVLM-FLNAASRAPVHNNQIAWLTR 267
           + S+A + A++L+ FLN  + A  H+ Q  WLT+
Sbjct: 526 VKSNACYWAVLLLVFLNTLTIASEHHGQPVWLTQ 559


>AF067227-1|AAD03587.1| 1912|Homo sapiens voltage-gated L-type
           calcium channel alpha-1 subunit protein.
          Length = 1912

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 169 ISSSATHSAIVLM-FLNAASRAPVHNNQIAWLTR 267
           + S+A + A++L+ FLN  + A  H+ Q  WLT+
Sbjct: 461 VKSNACYWAVLLLVFLNTLTIASEHHGQPVWLTQ 494


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,834,385
Number of Sequences: 237096
Number of extensions: 662581
Number of successful extensions: 1271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)