Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I11
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   159   6e-40
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    28   1.8  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    26   7.4  
U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical pr...    26   7.4  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    26   7.4  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  159 bits (385), Expect = 6e-40
 Identities = 76/79 (96%), Positives = 79/79 (100%)
 Frame = -2

Query: 326 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 147
           TRIGRAGTVRRQAVDV+PLRRVNQAIWLLCTGAREAAFRN+KTIAEC+ADELINAAKGSS
Sbjct: 132 TRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSS 191

Query: 146 NSYAIKKKDELERVAKSNR 90
           NSYAIKKKDELERVAKSNR
Sbjct: 192 NSYAIKKKDELERVAKSNR 210


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -2

Query: 269 RRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 90
           +RV   +    T    A  RN   + E  A+E I A +   N +A+K +   +  A SNR
Sbjct: 474 QRVQDTVQKARTAVGYAGTRNRSPLREADAEE-IAATEALKNRFAVKSRGTAKAKANSNR 532


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 230 AREAAFRNIKTIAECVADELINAAKGSSNSYAIKKK--DELERVAKSNR*KYFKI 72
           AR  A   I++ ++  +D L N+ + +  + A + K  +E E    SNR K+F++
Sbjct: 245 ARALAEDIIRSCSDNESDTLANSIRSTMTAAAKEGKLPEEFELTGSSNRSKFFEV 299


>U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical
           protein R02F2.7 protein.
          Length = 693

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 206 IKTIAECVADELINAAKGSSNSYAIK 129
           +KT+ + V ++LI A KGS N   +K
Sbjct: 394 LKTLPKDVLEKLIKAGKGSENENILK 419


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 230 AREAAFRNIKTIAECVADELINAAKGSSNSYAIKKK--DELERVAKSNR*KYFKI 72
           AR  A   I++ ++  +D L N+ + +  + A + K  +E E    SNR K+F++
Sbjct: 245 ARALAEDIIRSCSDNESDTLANSIRSTMTAAAKEGKLPEEFELTGSSNRSKFFEV 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,235,420
Number of Sequences: 27780
Number of extensions: 108498
Number of successful extensions: 313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)