Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I10
         (121 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732           30   0.23 
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432...    26   4.9  

>06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732
          Length = 139

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 27 ISTWGGNQT-SIDILIKPNTLVNVT 98
          I  WGGN   S+DI + PN+L NVT
Sbjct: 8  IGPWGGNGGGSVDISVPPNSLKNVT 32


>09_03_0042 +
           11842263-11842698,11842799-11842896,11843082-11843217,
           11843349-11843509,11843603-11843753,11843855-11843952,
           11844142-11844277,11844404-11844532,11844622-11844720,
           11844814-11844909,11845002-11845100,11845201-11845296,
           11846394-11846628,11846752-11846873,11846993-11847114,
           11847275-11847345,11847940-11848027,11848374-11848439,
           11848676-11848795
          Length = 852

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   HEAAKAKPNFNVGWQPNFDRYT 67
           H+  KAKP+F VG++ +  + T
Sbjct: 481 HDTQKAKPDFTVGYKTDLGKST 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,150
Number of Sequences: 37544
Number of extensions: 30893
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 14,793,348
effective HSP length: 20
effective length of database: 14,042,468
effective search space used: 266806892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)