Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I10
         (121 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-9|CAB04736.2|  318|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z92789-6|CAB07218.2|  303|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z66567-8|CAA91494.1|  402|Caenorhabditis elegans Hypothetical pr...    25   7.5  
Z66561-9|CAA91462.1|  402|Caenorhabditis elegans Hypothetical pr...    25   7.5  

>Z81593-9|CAB04736.2|  318|Caenorhabditis elegans Hypothetical
           protein T20B3.7 protein.
          Length = 318

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 103 IRVTFTRVLGLISISIEVWL 44
           I VTF ++LGL+S+    WL
Sbjct: 2   ISVTFRQILGLVSLLCATWL 21


>Z92789-6|CAB07218.2|  303|Caenorhabditis elegans Hypothetical
           protein H02I12.4 protein.
          Length = 303

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 27  ISTWGGNQTS--IDILIKPNTLVNVTRI 104
           IST   N+ S   ++++KPN + NVTRI
Sbjct: 40  ISTDVQNEESNVFEVILKPNVVFNVTRI 67


>Z66567-8|CAA91494.1|  402|Caenorhabditis elegans Hypothetical
           protein ZK455.6 protein.
          Length = 402

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 6   RLRRRNLISTWGGNQTSIDILIKPNTLVNVTRIFKRE 116
           +L+R ++     G   SID L  PN   +++ IFK E
Sbjct: 85  QLQRDSIGRKKSGASISIDPLFTPNVASSLSAIFKNE 121


>Z66561-9|CAA91462.1|  402|Caenorhabditis elegans Hypothetical
           protein ZK455.6 protein.
          Length = 402

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 6   RLRRRNLISTWGGNQTSIDILIKPNTLVNVTRIFKRE 116
           +L+R ++     G   SID L  PN   +++ IFK E
Sbjct: 85  QLQRDSIGRKKSGASISIDPLFTPNVASSLSAIFKNE 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,837
Number of Sequences: 27780
Number of extensions: 28223
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)