Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I09
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    28   0.38 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   1.5  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   1.5  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   2.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   2.7  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   2.7  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   3.5  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   3.5  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   3.5  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   3.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   3.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   3.5  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   3.5  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   4.7  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   4.7  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   4.7  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    24   6.2  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    24   8.2  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    24   8.2  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    24   8.2  

>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 0.38
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +3

Query: 66  DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQN 245
           D  EK V  S +    E+ QK++ D  E+ D  S+  T T  K+      +   EK HQ 
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187

Query: 246 LLEGVEHFDKT 278
            +EGV++  KT
Sbjct: 188 AVEGVQNSKKT 198


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = +3

Query: 6   GANDLKSQLEGFNTSCLRDVDTNE-KIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTE 182
           GA  ++++  G++   +    TN  KI +PSA+    +     L  G + +  T  K  +
Sbjct: 658 GAFKVEAEFLGYSDDKIHLHKTNGVKISVPSAKMSYKDLDYVELMTGKKVYSRTERKK-D 716

Query: 183 TQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLP 320
           TQ+++        +  K+H    E  +  D+   KH  TEE++  P
Sbjct: 717 TQKQS---HDHGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGP 759


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 9   ANDLKSQLE---GFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKH 176
           +ND++S      G     L DVDT  ++VL   E       Q+   DGI +FDA  +KH
Sbjct: 182 SNDIESVQNCWLGDENLLLADVDTENEVVLSVLEKWIKNVVQEYDIDGI-RFDA--IKH 237


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +3

Query: 12  NDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 152
           N+L+S L+    SCL+D  T+ K ++       +EKTQ+ +FD +++
Sbjct: 23  NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/62 (20%), Positives = 27/62 (43%)
 Frame = +3

Query: 99  EDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKT 278
           EDV  E+ +    +  E  D    ++ E + +N  P+       +     + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307

Query: 279 QM 284
            +
Sbjct: 308 NL 309


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 238 CAFSAATTSLSGRGFFSWVSVCFKLVASNFSI-PSNRDF 125
           C  S  +TS    G   W S CFK V  N  + PS+ DF
Sbjct: 27  CWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDF 65


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 124 WVFSVATSSADGRTIFSFVSTSRKQL 47
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 124 WVFSVATSSADGRTIFSFVSTSRKQL 47
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 124 WVFSVATSSADGRTIFSFVSTSRKQL 47
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 255 LPVSSDVPFPLRQHLCQAEGSSPGFLYV 172
           LP  S   FPL +    A  +SPGF+ V
Sbjct: 114 LPTPSQELFPLEEEKLYAPENSPGFVEV 141


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 108 ATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPD 209
           +T   QKSL D  E  DA  LK + +     LPD
Sbjct: 83  STLDLQKSLIDADENVDANVLKDSASIRHVSLPD 116


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = -1

Query: 262 STPSSKF*CAFSAATTSLSGRGFFSWVSVCFKLVASNFSIPSNRDFWVFSVATSSADGRT 83
           ++ SS F  + +  ++ +S     S  S    +++S+ S PS+    + S +TSS     
Sbjct: 547 TSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSST---- 602

Query: 82  IFSFVSTSRKQLV---LNPSS*LLRSLAP 5
            FS  STS    +   ++ SS +L S  P
Sbjct: 603 -FSSASTSSPSSISSSISSSSTILSSPTP 630


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 124 WVFSVATSSADGRTIFSFVSTSRKQL 47
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 36  GFNTSCLRDV-DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEK 194
           G+N + +++V D ++KI+L +         Q+ LF+  +K   T+  H+E +EK
Sbjct: 77  GYNITFVQNVTDIDDKIILRAR--------QQYLFEEYKKQQGTNKSHSEAREK 122


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +3

Query: 81  IVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPD 209
           + L S ED+ +  T+ S+   + +     ++HT  + K  +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 191 LLGFCMFQTGGIEFLN 144
           L+G+CMF   GI +LN
Sbjct: 618 LIGYCMFTFLGISYLN 633


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 217 TSLSGRGFFSWVSVCFKLVASNFSIPSNRDF 125
           T++SG G F  +S C+K V   +SIP+   F
Sbjct: 405 TNVSG-GIF--MSTCYKYVLGKYSIPTESCF 432


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 243 NLLEGVEHFDKTQMKHTTTEEKNSL 317
           N+LE  EH D ++ + T  ++ N L
Sbjct: 69  NMLEEPEHHDNSKKESTNLDDSNML 93


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = +3

Query: 237 HQNLLEGVEHFDKTQMKHTTTEEKNSLPTXXXXXXXXXXNK 359
           H + + G E       +HT+ E + +LP           NK
Sbjct: 49  HTSTVAGTEGGSSLSRRHTSAESRKALPNQQQLAQSGLLNK 89


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +3

Query: 24  SQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE---KFDATSLKHTETQEK 194
           S ++ F+ S +  +  +E+ +    +        K   DGI+    F   S         
Sbjct: 246 SFVQHFSLSTINLIKNDERSLWVHFKAGTNMDGAKEAVDGIQLDSNFTIESENPKIPTHT 305

Query: 195 NPLPDKDVVAAEKAHQNLLEGVEHF-DKTQMKHT 293
           +P+P  ++ ++E+  +NLLE +  F D+   K++
Sbjct: 306 HPIPIFEIASSEQTCKNLLEKLIRFIDRASTKYS 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,360,306
Number of Sequences: 5004
Number of extensions: 26827
Number of successful extensions: 99
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)