Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I08
         (169 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   7.3  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               18   9.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 10/50 (20%), Positives = 23/50 (46%)
 Frame = -3

Query: 167 VSKSHESISNF*ISFVNIL**VYRVCFIEIFTNIHWFTRMLLLESDFYFS 18
           +S   E+I +        L  V+ +C+  I+  + W  +++   S F ++
Sbjct: 195 ISDGIENIGSIRWELAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFPYA 244


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 10/50 (20%), Positives = 23/50 (46%)
 Frame = -3

Query: 167 VSKSHESISNF*ISFVNIL**VYRVCFIEIFTNIHWFTRMLLLESDFYFS 18
           +S   E+I +        L  V+ +C+  I+  + W  +++   S F ++
Sbjct: 248 ISDGIENIGSIRWELAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFPYA 297


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 80 IFTNIHWFTRMLLLESDFYFSE 15
          +F N H+F  +++     YF E
Sbjct: 1  MFKNYHFFFILVITLIFLYFGE 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,058
Number of Sequences: 438
Number of extensions: 493
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)