Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I07
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   4.2  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    24   5.5  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    24   5.5  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    23   7.3  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    23   9.6  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    23   9.6  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 86  LQSLLVVGVICRHHHH 39
           L  L+ +G + RHHHH
Sbjct: 469 LDKLIRIGSLHRHHHH 484


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 174 TIKFIKLSFKAHIQYFN 124
           T+ F+ L  + H+QYF+
Sbjct: 158 TLSFVSLDIEQHLQYFH 174


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 225 FDSWIGLITPGPFNPVNGI 281
           F  WIG + P    PVN +
Sbjct: 389 FSGWIGTVNPYTQTPVNAV 407


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 231 SWIGLITPGPFNPVNGI 281
           SW+  + PG FN ++G+
Sbjct: 67  SWVCFLCPGMFNALSGL 83


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 284 PNTIYWIKWTRCYQTDPRVK 225
           P T Y   W+R Y T+P+++
Sbjct: 920 PLTSYLFDWSRKYFTEPQMR 939


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 162 IKLSFKAHIQYFNFTLKFKSL 100
           ++L+ K H+ YF+  LKF  L
Sbjct: 343 LELAKKMHLYYFSIYLKFGQL 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,168,835
Number of Sequences: 5004
Number of extensions: 17933
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)