Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I07
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1482 - 37680159-37680356,37680411-37680452,37680748-376808...    27   2.7  
03_03_0232 + 15644934-15645224,15645696-15645791                       27   3.6  
12_02_0390 - 18510095-18510148,18510318-18512450,18513018-185136...    26   4.7  
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171...    26   4.7  
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386...    26   4.7  

>01_06_1482 -
           37680159-37680356,37680411-37680452,37680748-37680846,
           37681011-37681118,37681205-37681295,37681421-37681546,
           37681840-37681931,37682082-37682143,37682235-37682320,
           37682470-37682603
          Length = 345

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 159 KLSFKAHIQYFNFTLKFKSLF*LIFTKFISSWRHLQASP 43
           +L  + H+Q F  T+K    F +I+TK I  W H+   P
Sbjct: 210 ELKLREHLQSFLETVKS---FNMIYTKEIHPWTHMMEVP 245


>03_03_0232 + 15644934-15645224,15645696-15645791
          Length = 128

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 219 FYFDS-WIGLITPGPFNPVNGIRI 287
           F FDS ++GLI  G  + +NG+R+
Sbjct: 73  FRFDSKFVGLIKSGSISEINGVRV 96


>12_02_0390 -
           18510095-18510148,18510318-18512450,18513018-18513681,
           18514089-18514202,18514835-18514979,18515274-18515331
          Length = 1055

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -1

Query: 138 IQYFNFTLK----FKSLF*LIFTKFISSWRHLQASPSF 37
           I+YFN   K     +SL  +I TK++  W+    S SF
Sbjct: 773 IKYFNMICKTDLPVRSLCVIILTKYLDEWKGFAFSDSF 810


>10_01_0145 -
           1708597-1708824,1710225-1710468,1711217-1711263,
           1711767-1711857,1712982-1713094,1713387-1713462,
           1713501-1713560,1713759-1713835,1714105-1714672,
           1715332-1715509,1715632-1715774,1717255-1717424,
           1717588-1717822,1718565-1718779
          Length = 814

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 277 PFTGLNGPGVIKPIHESK*KYVNEMTV 197
           PFT L+  GV+ PI++ +  +V E+ V
Sbjct: 434 PFTVLSNLGVVSPINKGERLFVGEIVV 460


>05_03_0211 +
           10236867-10237075,10238036-10238270,10238433-10238602,
           10240324-10240466,10240590-10240767,10241441-10242008,
           10243001-10243113,10244521-10244764,10245201-10245278,
           10246500-10246727
          Length = 721

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 277 PFTGLNGPGVIKPIHESK*KYVNEMTV 197
           PFT L+  GV+ PI++ +  +V E+ V
Sbjct: 432 PFTVLSNLGVVSPINKGERLFVGEIVV 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,226,925
Number of Sequences: 37544
Number of extensions: 100523
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)