Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I07
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical pr...    27   1.9  
Z19156-2|CAE17940.2|  275|Caenorhabditis elegans Hypothetical pr...    27   2.5  

>Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical
           protein JC8.5 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 204 ISFTYFYFDSWIGLITPGPFNPVNGIRISP 293
           I  +Y +F++  GL  P PF+P N   I+P
Sbjct: 221 ILLSYTFFEAKSGLKLPDPFDPKNRPSIAP 250


>Z19156-2|CAE17940.2|  275|Caenorhabditis elegans Hypothetical
           protein T02C1.2 protein.
          Length = 275

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 165 FIKLSFKAHIQYFNFTLKFKSLF*L--IFTKFISSWRHLQASPSFTPR 28
           F+ +  ++H Q+  +   F  L  L    T F  SWR  +A P FTP+
Sbjct: 39  FLGIESRSHSQWSRWIYGFCLLTFLPCYATVFFISWRKHRAKPLFTPK 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,443,241
Number of Sequences: 27780
Number of extensions: 98062
Number of successful extensions: 184
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)