Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I07
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   2.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   2.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   5.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   5.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   5.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 93  LIFTKFISSWRHLQASP 43
           ++   ++S W H+ ASP
Sbjct: 245 IVVISWVSFWLHMDASP 261


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 43  IIYASCRIHAA 11
           I+YASC++ AA
Sbjct: 136 IVYASCKLQAA 146


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 283 RIPFTGLNGPGVIKPIHE 230
           +IP T L   GV+  +H+
Sbjct: 158 KIPITKLTAMGVLNNLHD 175


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 283 RIPFTGLNGPGVIKPIHE 230
           +IP T L   GV+  +H+
Sbjct: 158 KIPITKLTAMGVLNNLHD 175


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 283 RIPFTGLNGPGVIKPIHE 230
           +IP T L   GV+  +H+
Sbjct: 158 KIPITKLTAMGVLNNLHD 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,149
Number of Sequences: 438
Number of extensions: 1237
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)