Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I06
         (152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    25   1.0  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    24   2.4  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    23   4.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   5.5  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    23   7.2  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    23   7.2  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    23   7.2  

>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 84 AGEVFSPIPTGPLHDEARWVRSSC 13
          A E+F  + + PLH+   W+   C
Sbjct: 23 ADELFDDLSSSPLHENVSWISWFC 46


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 103 FWGEEVGWRSILPH 62
           +W E + WR  LPH
Sbjct: 37  YWQEYLAWREALPH 50


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 55  SGDGGEYFSSPPLRPRM 105
           S +G +YFS PP  P +
Sbjct: 196 SSEGSDYFSRPPPTPNV 212


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 95  RRGGLEKYSPPSPLGHCTTRPG 30
           +RG   + SPP PLG+ T   G
Sbjct: 55  QRGNEFQASPPPPLGYVTPEYG 76


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 103 FWGEEVGWRSILPHP 59
           FW   VGW  IL +P
Sbjct: 167 FWYAHVGWMIILQNP 181


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 64  GGEYFSSPPLRPRMEA 111
           G +Y+SSP +RP + A
Sbjct: 181 GSQYYSSPHVRPAVGA 196


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +2

Query: 53  PVGMG--ENTSPAHLFAPEWRHDPT 121
           P+G+    + S  HLF P WR   T
Sbjct: 25  PLGLRYRSDASSLHLFTPTWRDHAT 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 859,715
Number of Sequences: 5004
Number of extensions: 14961
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)