Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_I06
(152 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0879 + 22183052-22183340,22183802-22183949,22184017-22184044 31 0.13
05_03_0090 - 8330283-8330831 29 0.51
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 29 0.68
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 29 0.68
10_08_0058 + 14521922-14522779 29 0.68
07_03_1627 + 28229292-28229615,28229735-28229812,28231105-282311... 28 1.2
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 28 1.2
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 27 1.6
12_01_0025 + 203476-203655,205006-205233,205317-206000 27 2.1
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780... 27 2.1
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 27 2.7
12_02_0175 - 14930054-14930437 26 3.6
09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23... 26 3.6
04_03_1006 - 21669668-21669842,21669908-21670116 26 4.8
05_04_0202 - 19010953-19013355 25 6.3
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 25 6.3
01_01_1184 - 9430623-9430658,9430945-9431013,9431104-9431270,943... 25 6.3
12_01_0897 - 8675966-8676571,8676918-8676995 25 8.3
08_01_0434 + 3809681-3810016,3810039-3811100 25 8.3
06_02_0016 - 10623796-10625317,10626493-10627541 25 8.3
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 25 8.3
03_04_0133 + 17585278-17585282,17586257-17586386,17587444-175875... 25 8.3
>08_02_0879 + 22183052-22183340,22183802-22183949,22184017-22184044
Length = 154
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = +1
Query: 1 VLNSARGANPPGLVVQWPSGDGGEYFSSPPLRP 99
V S PP L V P G GGEY SS P P
Sbjct: 54 VTRSITIVRPPSLSVPSPRGGGGEYSSSVPSSP 86
>05_03_0090 - 8330283-8330831
Length = 182
Score = 29.1 bits (62), Expect = 0.51
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 79 RSILPHPHWAIARRGPVGSLLVP 11
RS PHP WA R+GP S + P
Sbjct: 8 RSGPPHPRWAKIRQGPATSSVTP 30
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 28.7 bits (61), Expect = 0.68
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 138 PPGIFTVGSCLHSGAKRWAGEVFSPIPTGPLHDEARWVRSSCR 10
P + T+G LHS +RW + + P +E + + ++CR
Sbjct: 146 PKALETIGKTLHSQYERWQPKARYKLQLDPTLEEVKKLCNTCR 188
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 28.7 bits (61), Expect = 0.68
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 138 PPGIFTVGSCLHSGAKRWAGEVFSPIPTGPLHDEARWVRSSCR 10
P + T+G LHS +RW + + P +E + + ++CR
Sbjct: 141 PKALETIGKTLHSQYERWQPKARYKLQLDPTLEEVKKLCNTCR 183
>10_08_0058 + 14521922-14522779
Length = 285
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 101 LGRRGGLEKYSPPSPLGHCTTRPGGFAPRAEF 6
+G G +PP+ LG TT P PRA+F
Sbjct: 1 MGSTSGPACSAPPAALGSSTTTPTATPPRAQF 32
>07_03_1627 +
28229292-28229615,28229735-28229812,28231105-28231164,
28231750-28232040,28232149-28232277
Length = 293
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 22 ANPPGLVVQWPSGDGGEYFSSPPLRP 99
A PP VQ GDGG +PP RP
Sbjct: 57 ARPPLTAVQCQKGDGGGAPPAPPRRP 82
>03_06_0646 + 35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 135 PGIFTVGSCLHSGAKRWAGEVFSPIPTGPLHDEARWVRSSCRI 7
PG+ VG C SG K A +G L E +RSSC+I
Sbjct: 1084 PGVAAVGRCFESG-KLMAARTDVVDWSGTLDCEMFLIRSSCKI 1125
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 49 WPSGDGGEYFSSPPLRPRMEA*PNSEDSGRQDI 147
W +GD E SPPLR ++EA + +G+ D+
Sbjct: 204 WTAGDILELLQSPPLRQQVEAFTHVLRTGQIDL 236
>12_01_0025 + 203476-203655,205006-205233,205317-206000
Length = 363
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 118 WVMPPFWGEEVGWRSILPHPHWAIARRGPVGSLL 17
WV+ +WGE + W L P A GP+G LL
Sbjct: 9 WVLATWWGEPLLW---LWQPFRAGGGAGPLGHLL 39
>01_06_1310 -
36176008-36176472,36176547-36176774,36177313-36178080,
36178250-36178732,36179883-36180010,36180539-36180607,
36180688-36180892,36181005-36181067
Length = 802
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 128 SSLLGHASILGRRGGLEKYSPPSPLG 51
SS S+LG GGL SPP P G
Sbjct: 16 SSRQRQGSLLGGHGGLRASSPPLPCG 41
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 138 PPGIFTVGSCLHSGAKRWAGEVFSPIPTGPL 46
P IFT+ + W GEV+SP T P+
Sbjct: 300 PSSIFTLLQTGVADTVEWGGEVYSPQITAPM 330
>12_02_0175 - 14930054-14930437
Length = 127
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 125 SLLGHASILGRRGGLEKYSPPSPLGHCTTRPGGFAPRAEFN 3
S G + RR +++ P P+G CT F PR N
Sbjct: 61 SATGEEDNIRRRRLVDEACRPLPVGRCTNPNARFPPRTGLN 101
>09_01_0008 -
233137-233279,233712-233827,235376-235720,236218-236292,
236508-236636,237516-237589,237836-237968,239366-239584,
239671-239756,239843-241107,241304-241640,242548-242862,
243614-243697,243776-243883,243981-244079
Length = 1175
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 133 RNLHCWVMPPFWGEEVG 83
RNLH W+M W E +G
Sbjct: 826 RNLHIWMMAAGWREGIG 842
>04_03_1006 - 21669668-21669842,21669908-21670116
Length = 127
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 39 RRAMAQWGWGRI-LLQPTSSPQ 101
+RA QW WG +L+P S+P+
Sbjct: 99 KRAKEQWAWGHEGMLKPLSNPR 120
>05_04_0202 - 19010953-19013355
Length = 800
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 17 EERTHRASSCNGPVGMGENTSPAHL 91
E RTHR +S PVG+G SPA L
Sbjct: 130 EIRTHRKTSFRVPVGVGPG-SPAPL 153
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 126 FTVGSCLHSGAKRWAG 79
+TVG +H G KR+AG
Sbjct: 9 YTVGGSMHKGLKRFAG 24
>01_01_1184 -
9430623-9430658,9430945-9431013,9431104-9431270,
9431596-9431693,9431790-9431929,9432911-9433120,
9434314-9434832
Length = 412
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 102 SGAKRWAGEVFSPIPTGPLHDEARWVRSS 16
S A W SP P P H RW R S
Sbjct: 2 SCAAVWVPSPCSPSPVPPRHRRGRWRRGS 30
>12_01_0897 - 8675966-8676571,8676918-8676995
Length = 227
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 18 RSEPTGPRRAMAQWGWGRILL 80
RSE GP + W W R+LL
Sbjct: 161 RSEIFGPLVLLQLWSWSRLLL 181
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 134 PESSLLGHASILGRRGGLEKYSPPSP 57
P SS G A GRR G +SPP P
Sbjct: 57 PASSGGGEAGERGRRRGRLGFSPPEP 82
>06_02_0016 - 10623796-10625317,10626493-10627541
Length = 856
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 19 GANPPGLVVQWPSGDGGEYFSSPP 90
G PPG V Q +G GG+Y + P
Sbjct: 47 GLAPPGGVRQKDAGGGGQYKAGDP 70
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -1
Query: 134 PESSLLGH-ASILGRRGGLEKYSPPSPLGHCTTRPGGFAPR 15
P SS H A+ GG P L HC +P G PR
Sbjct: 112 PRSSTTLHSAASTSAHGGSPTLPPSLSLRHCLPQPIGARPR 152
>03_04_0133 +
17585278-17585282,17586257-17586386,17587444-17587591,
17587661-17587849,17587999-17589150,17589303-17589466
Length = 595
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -1
Query: 134 PESSLLGHASILGRRGGLEKYSPPSPLGHCTTRPGGFA 21
PES H + GL PLG T PGG A
Sbjct: 462 PESEDSFHEKVADSLSGLRDGPSQKPLGSNTDNPGGDA 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,763,755
Number of Sequences: 37544
Number of extensions: 140051
Number of successful extensions: 602
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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