Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I06
         (152 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK093927-1|BAC04254.1|  180|Homo sapiens protein ( Homo sapiens ...    31   0.52 
AY210418-1|AAO34701.1| 3487|Homo sapiens CUB and sushi multiple ...    29   2.1  
AL355178-2|CAI23435.1|  426|Homo sapiens CUB and Sushi multiple ...    29   2.1  
AL355178-1|CAI23434.1| 1167|Homo sapiens CUB and Sushi multiple ...    29   2.1  
AL161643-1|CAI23498.1| 1167|Homo sapiens CUB and Sushi multiple ...    29   2.1  
AK127722-1|BAC87101.1| 1167|Homo sapiens protein ( Homo sapiens ...    29   2.1  
AB212622-1|BAD97692.1| 3631|Homo sapiens CSMD2 protein protein.        29   2.1  
M29458-1|AAA52293.1|  260|Homo sapiens CA3 protein.                    28   4.8  
BC004897-1|AAH04897.1|  260|Homo sapiens carbonic anhydrase III,...    28   6.4  

>AK093927-1|BAC04254.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36608 fis, clone TRACH2015824. ).
          Length = 180

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 17  EERTHRASSCNGPVGMGENTSPAHLFAPEWRHDPTVKIPGGR 142
           E R HR + C  P  +G  T P HL    WR D      GGR
Sbjct: 76  EGRRHRRAGCQ-PATLGGPTRPLHLSGGRWRWDGGRPGRGGR 116


>AY210418-1|AAO34701.1| 3487|Homo sapiens CUB and sushi multiple
            domains 2 protein.
          Length = 3487

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 152  VSISCLPESSLLGHASILGRRGGLEKYSPPSPLGHCTTRPGGFAPRAE 9
            VS  C P  +L GHA I    G + +++ P PL  C  + GG     E
Sbjct: 1931 VSFQCEPGYALQGHAHISCMPGTVRRWNYPPPL--CIAQCGGTVEEME 1976


>AL355178-2|CAI23435.1|  426|Homo sapiens CUB and Sushi multiple
           domains 2 protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 152 VSISCLPESSLLGHASILGRRGGLEKYSPPSPLGHCTTRPGGFAPRAE 9
           VS  C P  +L GHA I    G + +++ P PL  C  + GG     E
Sbjct: 70  VSFQCEPGYALQGHAHISCMPGTVRRWNYPPPL--CIAQCGGTVEEME 115


>AL355178-1|CAI23434.1| 1167|Homo sapiens CUB and Sushi multiple
           domains 2 protein.
          Length = 1167

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 152 VSISCLPESSLLGHASILGRRGGLEKYSPPSPLGHCTTRPGGFAPRAE 9
           VS  C P  +L GHA I    G + +++ P PL  C  + GG     E
Sbjct: 844 VSFQCEPGYALQGHAHISCMPGTVRRWNYPPPL--CIAQCGGTVEEME 889


>AL161643-1|CAI23498.1| 1167|Homo sapiens CUB and Sushi multiple
           domains 2 protein.
          Length = 1167

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 152 VSISCLPESSLLGHASILGRRGGLEKYSPPSPLGHCTTRPGGFAPRAE 9
           VS  C P  +L GHA I    G + +++ P PL  C  + GG     E
Sbjct: 844 VSFQCEPGYALQGHAHISCMPGTVRRWNYPPPL--CIAQCGGTVEEME 889


>AK127722-1|BAC87101.1| 1167|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45822 fis, clone NT2RP8001604, moderately
           similar to Homo sapiens CUB and Sushi multiple domains 1
           (CSMD1). ).
          Length = 1167

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 152 VSISCLPESSLLGHASILGRRGGLEKYSPPSPLGHCTTRPGGFAPRAE 9
           VS  C P  +L GHA I    G + +++ P PL  C  + GG     E
Sbjct: 844 VSFQCEPGYALQGHAHISCMPGTVRRWNYPPPL--CIAQCGGTVEEME 889


>AB212622-1|BAD97692.1| 3631|Homo sapiens CSMD2 protein protein.
          Length = 3631

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 152  VSISCLPESSLLGHASILGRRGGLEKYSPPSPLGHCTTRPGGFAPRAE 9
            VS  C P  +L GHA I    G + +++ P PL  C  + GG     E
Sbjct: 1971 VSFQCEPGYALQGHAHISCMPGTVRRWNYPPPL--CIAQCGGTVEEME 2016


>M29458-1|AAA52293.1|  260|Homo sapiens CA3 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 53  PVGMGENTSPAHLFAPEWRHDPTVK 127
           P   GEN SP  L   + RHDP+++
Sbjct: 21  PNAKGENQSPVELHTKDIRHDPSLQ 45


>BC004897-1|AAH04897.1|  260|Homo sapiens carbonic anhydrase III,
           muscle specific protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 53  PVGMGENTSPAHLFAPEWRHDPTVK 127
           P   GEN SP  L   + RHDP+++
Sbjct: 21  PNAKGENQSPIELHTKDIRHDPSLQ 45


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,735,863
Number of Sequences: 237096
Number of extensions: 796319
Number of successful extensions: 9979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9979
length of database: 76,859,062
effective HSP length: 30
effective length of database: 69,746,182
effective search space used: 1394923640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)