Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I04
         (249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   1.5  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    24   2.6  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    24   2.6  
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    23   5.9  
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po...    23   5.9  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    23   5.9  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    23   7.8  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    23   7.8  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         23   7.8  

>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 86  ISPSCVYRPLISRWLSCRLK 145
           +SP+C+  PL++ W    LK
Sbjct: 254 LSPACIVAPLLTAWYRDELK 273


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 77  DPIISPSCVYRPLISRWLSCRLKL 148
           D +++P  +Y  LI   L+C LKL
Sbjct: 850 DLVLAPDAIYENLIIPLLTCILKL 873


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 139 TTRQPSANQRAIYT*--RRDDRVKKRYIVK 56
           TT +PS   R+  T   RR +RVKKR+++K
Sbjct: 328 TTARPSIFGRSHGTSQFRRRERVKKRHVIK 357


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 177 DIHMH*SIPCNFKRQDNHRLIRGRYTHEGEMIGSRKGIL*KTSGALLQYVGE 22
           D HM    P     +D+HR ++ + T E   +  ++G   +  GALL  +G+
Sbjct: 38  DSHMEIDQPEGSMEEDDHRQVKEKNTSENS-VEQKRGR--RMFGALLGTLGK 86


>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 228

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 91  RDDRVKKRYIVKNEWGP 41
           +DD   K +I++ EW P
Sbjct: 206 KDDAKLKEWIIEREWNP 222


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 91  RDDRVKKRYIVKNEWGP 41
           +DD   K +I++ EW P
Sbjct: 543 KDDAKLKEWIIEREWNP 559


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 193 RTRERVVFAIVLSNDI 240
           R +E ++F++V SND+
Sbjct: 584 REKEAIIFSLVRSNDV 599


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 57  FTIYLFLTLSSRLH-VYIAL*LADG 128
           F IY+ L LS RLH ++I     DG
Sbjct: 131 FYIYVLLILSKRLHSIFILRLFNDG 155


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 17  EISPTYCNRAPLVFYNIPFLDPIISPSCVYRPLISRWLSC 136
           E +  Y ++ P  F  I   D   S     +P ISRW +C
Sbjct: 335 EYTSVYSDKIPPTFTIIGIPD-YHSRKPSLKPFISRWFNC 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,080,015
Number of Sequences: 5004
Number of extensions: 19872
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)