Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I04
         (249 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0090 + 717524-719080                                             26   3.7  
06_01_0438 + 3110703-3111945,3112486-3113057                           26   4.8  
01_03_0021 + 11720744-11720898,11720991-11721246                       25   6.4  

>12_01_0090 + 717524-719080
          Length = 518

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 15  RRFPRRTAIGPHSFFTIYLFLTLSSRLHVYIAL 113
           RRFPRR+A G H    +   L L  R     AL
Sbjct: 10  RRFPRRSAAGGHQLHALLAKLGLLHRSEFLSAL 42


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 62  CKKRVGPYCSTSGK 21
           C K+VG YCS +GK
Sbjct: 468 CVKKVGSYCSKTGK 481


>01_03_0021 + 11720744-11720898,11720991-11721246
          Length = 136

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 17  EISPTYCNRAPLVFYNI--PFLDPIISPSCVYRPLISRWLSCRLKLHGIDQC 166
           ++   YC  +PL    +     DP I+   +   + S W  C +   G+++C
Sbjct: 78  KLRSAYCCASPLSGMELLMNIADPYITAGFLAPAIASSWCCCAVSHDGVNRC 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,782,034
Number of Sequences: 37544
Number of extensions: 120282
Number of successful extensions: 238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)