Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I04
         (249 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    26   3.1  
AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine re...    26   4.1  
Z49969-2|CAA90270.1|  564|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U80836-9|AAB37895.1|  303|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 20  ISPTYCNRAPLVFYNIPFLDPIISPS 97
           IS T   +APL+F   P L PI +PS
Sbjct: 295 ISQTQFPQAPLIFPGRPDLPPITAPS 320


>AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine
           receptor, class w protein8 protein.
          Length = 330

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 126 GCLVV*SYTVLISAYEYLTF 185
           GCL+V + T++ SAY +L F
Sbjct: 166 GCLLVLTVTIMSSAYSFLYF 185


>Z49969-2|CAA90270.1|  564|Caenorhabditis elegans Hypothetical
           protein W01C9.2 protein.
          Length = 564

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -3

Query: 154 TV*LQTTRQPSANQRAIYT*RRDDRVKKRYIVK 56
           T+ L T R+PSAN + ++    + + +++ + K
Sbjct: 31  TIDLDTVRKPSANSKVVHDVGSESQQQRKNVTK 63


>U80836-9|AAB37895.1|  303|Caenorhabditis elegans Hypothetical
           protein B0432.10 protein.
          Length = 303

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 190 CRTRERVVFAIVLSND 237
           C TR R VF+++L ND
Sbjct: 70  CGTRRREVFSVLLKND 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,058,510
Number of Sequences: 27780
Number of extensions: 113683
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)