Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_I03
(249 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 36 0.001
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 28 0.16
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 0.48
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 0.63
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 1.5
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 25 1.9
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 1.9
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 24 3.4
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 23 4.5
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 23 4.5
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28... 23 4.5
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.8
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 23 7.8
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 23 7.8
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 23 7.8
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 23 7.8
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 7.8
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 23 7.8
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 35.5 bits (78), Expect = 0.001
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 85 LGKVFDVFGPVTEPHYCVRFNSVEHVRERGALPGAEVF 198
+G + + FGPV+ P+Y VRF++ E A G VF
Sbjct: 291 IGYIHETFGPVSSPYYIVRFSTEEECSAINACMGRPVF 328
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.16
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 55 ILFLDNGAKALGKVFDVFGPVTEPHYCVRFNSVEHV 162
I+F A ALG++ +F P Y +R N VE V
Sbjct: 241 IMFGIGAAPALGQLISLFWTPESPRYLLRHNHVEKV 276
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.6 bits (56), Expect = 0.48
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 171 ALAHVLHRVEPHTVMRLRHGSEYVENFS*SLGSVI 67
A+A +LH H V+ + HG+EY N S + S I
Sbjct: 717 AVARILHT---HVVIDISHGNEYTANDSLAKASTI 748
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 0.63
Identities = 9/28 (32%), Positives = 22/28 (78%)
Frame = +1
Query: 58 LFLDNGAKALGKVFDVFGPVTEPHYCVR 141
++L+N ++ +GK+ +VFGP+ + ++ V+
Sbjct: 60 IYLENKSQ-IGKIDEVFGPMNQVYFTVK 86
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 1.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 185 PGSAPRSRTCSTELNRTQ*C 126
P S+PRS +CS N Q C
Sbjct: 159 PSSSPRSPSCSRVFNAVQLC 178
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 24.6 bits (51), Expect = 1.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 121 EPHYCVRFNSVEHVR 165
E H CV F+++EHVR
Sbjct: 115 EIHDCVLFDAIEHVR 129
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 1.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 46 LDSILFLDNGAKALGKVFDVFGPVTEPHYCVRFNSVEHVRERGA 177
LD LFL G +A + T + CV F+S H GA
Sbjct: 109 LDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGA 152
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 23.8 bits (49), Expect = 3.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 40 VDLDSILFLDNGAKALGKV 96
+D+D I +DNG++ LG +
Sbjct: 464 IDIDDIAQVDNGSEDLGSI 482
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.4 bits (48), Expect = 4.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 92 FPRALAPLSKNRMLSRSTAGVSGNAPSCRI 3
F A+ ++K R+L RS S N P+C++
Sbjct: 93 FESAVTTVAK-RLLYRSQENASTNIPTCQV 121
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -2
Query: 215 SLRKAMNTSAPGSAPRSRTCSTELNRTQ*CGSVTGPNTSKTFPRALAPLSKNR 57
S R+ NT A G+ T S+ GS T T P A AP S+NR
Sbjct: 102 SPRQGNNTGANGALFSQSTNSSN------SGSYRNSVTGATLPNAHAPHSQNR 148
>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
L28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 176
Score = 23.4 bits (48), Expect = 4.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 2 KFGTRVHSRRHRLWISTAFCSWITEPRL*EKFSTY 106
KFG H R R+WI W+ L EKF Y
Sbjct: 46 KFG---HKTR-RVWIPNGHSKWLYSNVLEEKFHLY 76
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 22.6 bits (46), Expect = 7.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 37 PVSPGMHPRAEF 2
P+ PG+H R EF
Sbjct: 303 PIVPGLHSRVEF 314
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 22.6 bits (46), Expect = 7.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 3 NSARGCIPGDTGCGSRQHSVLG 68
N+ GC P + C + HS+LG
Sbjct: 138 NTIPGCSPTNLICKAVVHSILG 159
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 22.6 bits (46), Expect = 7.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 57 SVLG*RSQGSRKSFRRIRT 113
S+ G RS+G +S RRI+T
Sbjct: 232 SLCGSRSEGESESSRRIKT 250
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 22.6 bits (46), Expect = 7.8
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 203 AMNTSAPGSAPRSRTCSTELNRTQ*CGSVTGPNTSKTFPRALAPLSKNR 57
A +T+ GS+P LNR S+T P P +A K R
Sbjct: 528 AQDTNLMGSSPGMYNHMPYLNRATSANSITSPG---VLPEGMAASLKKR 573
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 121 PSRVRIRRKLFLEPWLRYPRTECCRDPQPVSPG 23
PS + + + L P + Y T +P P SPG
Sbjct: 576 PSPLSLPPEPLLSPTIDYSATPFPLEPPPESPG 608
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 22.6 bits (46), Expect = 7.8
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 10 HEGAFPETPAVDLDSILFLDNGAKALGKVFDVFGPVTE 123
+ G FP + L + + L KVF ++GP+ +
Sbjct: 355 YPGQFPSASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQ 392
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 22.6 bits (46), Expect = 7.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 17 VHSRRHRLWISTAFCS 64
+HS RHR W A C+
Sbjct: 145 LHSLRHRQWYIQATCA 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 985,019
Number of Sequences: 5004
Number of extensions: 16134
Number of successful extensions: 60
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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